Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4465247 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
446524744666801434hypothetical proteinBLASTP
446678244678401059quinolinate synthetaseQuickGO ontologyBLASTP
446824744698451599polygalacturonaseQuickGO ontologyBLASTP
44701404470340201hypothetical protein
44705474470651105hypothetical protein
44707814471758978ISPssy transposaseQuickGO ontologyBLASTP
447273844742911554hypothetical protein
44745434474902360ISPsy5 Orf1QuickGO ontologyBLASTP
4476434447650976tRNA-LysQuickGO ontologyBLASTP
44765734477253681exsB proteinQuickGO ontologyBLASTP
44772644477911648radical SAM domain proteinQuickGO ontologyBLASTP
44780834478901819hypothetical proteinBLASTP
44789084479408501peptidoglycan-associated lipoproteinQuickGO ontologyBLASTP
447946144807621302translocation protein TolB precursorQuickGO ontologyBLASTP
448075944818291071tolA proteinQuickGO ontologyBLASTP
44818294482293465tolR proteinQuickGO ontologyBLASTP
44823084483003696tolQ proteinQuickGO ontologyBLASTP
44829934483460468hypothetical proteinBLASTP