Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:2185907 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
21859072186515609cytochrome c oxidase cbb3-type subunit IIQuickGO ontologyBLASTP
218651521879571443cytochrome c oxidase cbb3-type subunit IQuickGO ontologyBLASTP
21879502188942993hypothetical proteinBLASTP
21889442189417474hypothetical proteinBLASTP
218949421913501857hypothetical proteinBLASTP
21913702192347978ISPssy transposaseQuickGO ontologyBLASTP
219264521942641620hypothetical proteinBLASTP
21943902195367978ISPssy transposaseQuickGO ontologyBLASTP
219604921983582310autotransporter putativeQuickGO ontologyBLASTP
21984232198959537hypothetical proteinBLASTP
21993982200060663hypothetical proteinBLASTP
220037822019431566aerotaxis receptorQuickGO ontologyBLASTP
22020402202840801CAAX amino terminal protease family proteinQuickGO ontologyBLASTP
220296122057052745aconitate hydrataseQuickGO ontologyBLASTP
220588522069581074hypothetical proteinBLASTP
22070252207279255hypothetical proteinBLASTP
220736822085101143erythronate-4-phosphate dehydrogenaseQuickGO ontologyBLASTP