Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4499143 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
449914345017852643hypothetical proteinBLASTP
450178545031191335hypothetical proteinBLASTP
450321445051091896potassium uptake proteinQuickGO ontologyBLASTP
450543145065191089hypothetical proteinBLASTP
450708845082541167abortive infection protein internal deletionQuickGO ontologyBLASTP
450904445105971554ISPsy5 transposaseQuickGO ontologyBLASTP
45106154510974360ISPsy5 Orf1QuickGO ontologyBLASTP
45114474511806360ISPsy5 Orf1QuickGO ontologyBLASTP
451182445133771554ISPsy5 transposaseQuickGO ontologyBLASTP
45147664515260495type III effector protein AvrPto1QuickGO ontologyBLASTP
45170284517564537hypothetical proteinBLASTP
45175614518493933hypothetical proteinBLASTP
45185824519010429hypothetical protein
451898045214062427tail fiber protein H putativeQuickGO ontologyBLASTP
45214154521939525hypothetical proteinBLASTP
45219974522404408hypothetical proteinBLASTP
45224014522631231regulatory protein CroQuickGO ontologyBLASTP
45227824523486705repressor protein cIQuickGO ontologyBLASTP