Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:6334735 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
633473563369542220TonB-dependent receptorQuickGO ontologyBLASTP
63369546337733780iron-compound ABC transporter ATP-binding protein putativeQuickGO ontologyBLASTP
63377346338684951iron compound ABC transporter iron compound-binding proteinQuickGO ontologyBLASTP
633868163397211041haemin ABC transporter permease protein putativeQuickGO ontologyBLASTP
63398036340780978ISPssy transposaseQuickGO ontologyBLASTP
63412876341928642hypothetical protein
634278163444721692transposition protein TnsD-related proteinQuickGO ontologyBLASTP
63455056346263759hypothetical proteinBLASTP
63464106346559150hypothetical proteinBLASTP
634702863486531626methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
634962463506461023ISPsy7 transposaseQuickGO ontologyBLASTP
635291363541991287sensor histidine kinaseQuickGO ontologyBLASTP
635487763558991023ISPsy4 transposaseQuickGO ontologyBLASTP
63558966356705810transposaseIS proteinQuickGO ontologyBLASTP
63569346357614681hypothetical proteinBLASTP
63579586358392435transcriptional regulator MerR familyQuickGO ontologyBLASTP
63584866359448963sodiumbile acid symporter family proteinQuickGO ontologyBLASTP
63596246359956333hypothetical proteinBLASTP
63600626361039978ISPssy transposaseQuickGO ontologyBLASTP
63613256362011687Ais protein putativeQuickGO ontologyBLASTP
636233063639791650hypothetical proteinBLASTP