Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:4913767 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
491376749160102244aldehyde oxidase and xanthine dehydrogenase molybdopterin bindingQuickGO ontologyBLASTP
491601949164774592Fe-2S iron-sulfur cluster binding domain-containing proteinQuickGO ontologyBLASTP
49166574916869213hypothetical protein
49169684917834867RpiR family transcriptional regulatorQuickGO ontologyBLASTP
491805449195531500glucose-6-phosphate 1-dehydrogenaseQuickGO ontologyBLASTP
49198374920355519hypothetical proteinBLASTP
492054449226522109Rhs element Vgr proteinQuickGO ontologyBLASTP
49226284923494867hypothetical protein
492350649257402235peptidoglycan-binding LysMQuickGO ontologyBLASTP
492583049271311302transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
49271324927488357hypothetical protein
49275234928515993hypothetical proteinBLASTP
492869449299441251major facilitator transporterQuickGO ontologyBLASTP
493009149311431053periplasmic solute binding proteinQuickGO ontologyBLASTP
49312104931695486ferric uptake regulator family proteinQuickGO ontologyBLASTP
49316924932480789ABC transporter relatedQuickGO ontologyBLASTP
49324804933268789ABC-3 proteinQuickGO ontologyBLASTP
49333284934239912LysR family transcriptional regulatorQuickGO ontologyBLASTP
493434149353871047ABC-type nitratesulfonatebicarbonate transport systems periplasmic components-like proteinQuickGO ontologyBLASTP
49353844936079696isochorismatase hydrolaseQuickGO ontologyBLASTP