Pre_GI Gene

Some Help

Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:6138669 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
61378366138672837formate dehydrogenase accessory protein FdhDQuickGO ontologyBLASTP
613866961410052337oxidoreductase molybdopterin-bindingQuickGO ontologyBLASTP
61411736141679507hypothetical protein
614173861436661929ATP-dependent DNA helicase domain proteinQuickGO ontologyBLASTP
61438476144659813hypothetical proteinBLASTP
614542161469741554ISPsy5 transposaseQuickGO ontologyBLASTP
61469926147351360ISPsy5 Orf1QuickGO ontologyBLASTP
614924261516202379EF hand domain proteinQuickGO ontologyBLASTP
615253161535471017lipoprotein putativeQuickGO ontologyBLASTP
615355361555892037Rhs element Vgr proteinQuickGO ontologyBLASTP
61556116156606996serinethreonine protein kinase putativeQuickGO ontologyBLASTP
61566156157343729serinethreonine phosphoprotein phosphataseQuickGO ontologyBLASTP
615734361609213579hypothetical proteinBLASTP
61608846161759876hypothetical proteinBLASTP
616176561630961332hypothetical proteinBLASTP