Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4940000 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
49400364940329294co-chaperonin GroESQuickGO ontologyBLASTP
49404434940553111hypothetical protein
49405854941079495cytoplasmic membrane family proteinQuickGO ontologyBLASTP
494139849421567593-ketoacyl-acyl-carrier-protein reductaseQuickGO ontologyBLASTP
494220549432121008hypothetical proteinBLASTP
49432874943733447MGMT family proteinQuickGO ontologyBLASTP
494378849453381551ampG protein putativeQuickGO ontologyBLASTP
49453714945694324hypothetical proteinBLASTP
494634249486332292Rhs element Vgr proteinQuickGO ontologyBLASTP
494863049502011572hypothetical proteinBLASTP
495123849526051368hypothetical proteinBLASTP
49535974953755159hypothetical protein
495385449554071554ISPsy5 transposaseQuickGO ontologyBLASTP
49554254955784360ISPsy5 Orf1QuickGO ontologyBLASTP
49563604957190831mechanosensitive ion channel family proteinQuickGO ontologyBLASTP
49573134957792480hypothetical proteinBLASTP
495796249588829212-dehydropantoate 2-reductaseQuickGO ontologyBLASTP
495892749609632037sensory box histidine kinaseQuickGO ontologyBLASTP
49609794961557579ATPcobIalamin adenosyltransferase putativeQuickGO ontologyBLASTP
49616994962649951hypothetical proteinBLASTP
49624924963274783glutathione S-transferase family proteinQuickGO ontologyBLASTP