Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4781326 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
478132647846613336hypothetical proteinBLASTP
47846544784902249hypothetical proteinBLASTP
478595147868358853-hydroxyacyl-CoA-acyl carrier protein transferaseQuickGO ontologyBLASTP
478868147898171137DNA-binding proteinQuickGO ontologyBLASTP
479077847923311554ISPsy5 transposaseQuickGO ontologyBLASTP
47923494792708360ISPsy5 Orf1QuickGO ontologyBLASTP
47935424794519978ISPssy transposaseQuickGO ontologyBLASTP
479453947959391401glutathione reductaseQuickGO ontologyBLASTP
47963924796724333carboxymuconolactone decarboxylase family proteinQuickGO ontologyBLASTP
479676947978751107NADHflavin oxidoreductaseNADH oxidase family proteinQuickGO ontologyBLASTP
479790447981222194-oxalocrotonate tautomerase family proteinQuickGO ontologyBLASTP
47982334798754522glutathione-regulated potassium-efflux system ancillary proteinQuickGO ontologyBLASTP
479875548005781824glutathione-regulated potassium-efflux system proteinQuickGO ontologyBLASTP
48006134800942330thioredoxinQuickGO ontologyBLASTP
48010074801705699isomerase putativeQuickGO ontologyBLASTP
48017094802299591transcriptional regulator TetR familyQuickGO ontologyBLASTP
48023934803166774oxidoreductase short chain dehydrogenasereductase familyQuickGO ontologyBLASTP
48032564803810555hypothetical proteinBLASTP
480423048053991170cystathionine beta-lyaseQuickGO ontologyBLASTP
48054774806364888hypothetical proteinBLASTP
48064584807027570transcriptional regulator TetR familyQuickGO ontologyBLASTP
480794748089691023ISPsy4 transposaseQuickGO ontologyBLASTP
48089664809775810transposaseIS proteinQuickGO ontologyBLASTP
481166348131471485hypothetical proteinBLASTP
48148514815513663transcriptional regulator TetR familyQuickGO ontologyBLASTP
48156384816423786oxidoreductase short-chain dehydrogenasereductase familyQuickGO ontologyBLASTP