Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:2671508 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
267150826734271920hypothetical proteinBLASTP
26735582674532975ABC transporter periplasmic substrate-binding protein aliphatic sulfonates familyQuickGO ontologyBLASTP
26746092675568960D-isomer specific 2-hydroxyacid dehydrogenase family proteinQuickGO ontologyBLASTP
267556526769111347monooxygenase NtaASnaASoxA familyQuickGO ontologyBLASTP
26779872678964978ISPssy transposaseQuickGO ontologyBLASTP
267914226802361095serine hydroxymethyltransferase putativeQuickGO ontologyBLASTP
268031526816551341multidrug resistance protein NorM putativeQuickGO ontologyBLASTP
268168126831111431capK domain proteinQuickGO ontologyBLASTP
26831082684091984pyridoxal-phosphate dependent enzyme family proteinQuickGO ontologyBLASTP
26841502685067918hypothetical proteinBLASTP
26851972686174978ISPssy transposaseQuickGO ontologyBLASTP
26863882686519132hypothetical protein
26865422687483942D-isomer specific 2-hydroxyacid dehydrogenase family proteinQuickGO ontologyBLASTP
268749926889141416oxidoreductase FAD-binding putativeQuickGO ontologyBLASTP
26891462689505360ISPsy5 Orf1QuickGO ontologyBLASTP
268952326910761554ISPsy5 transposaseQuickGO ontologyBLASTP
269113426926571524amine oxidase flavin-containingQuickGO ontologyBLASTP
269271326939241212acyl-CoA dehydrogenase family proteinQuickGO ontologyBLASTP
269395226951391188acyl-CoA dehydrogenase family proteinQuickGO ontologyBLASTP
269593326980652133methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
269808926995521464CheW domain proteinQuickGO ontologyBLASTP