Pre_GI Gene

Some Help

Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:895019 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
895019895747729hypothetical proteinBLASTP
8959198984832565clpB proteinQuickGO ontologyBLASTP
89878589886076tRNA-AsnQuickGO ontologyBLASTP
89889089896677tRNA-ProQuickGO ontologyBLASTP
89897289904776tRNA-LysQuickGO ontologyBLASTP
89914389921977tRNA-ProQuickGO ontologyBLASTP
9009889029161929hypothetical proteinBLASTP
903025903834810transposaseIS proteinQuickGO ontologyBLASTP
9038319048531023ISPsy4 transposaseQuickGO ontologyBLASTP
905575906534960alcohol dehydrogenase zinc-containingQuickGO ontologyBLASTP
906604907278675ribD C-terminal domain proteinQuickGO ontologyBLASTP
907344907931588hypothetical proteinBLASTP
907933908535603hypothetical proteinBLASTP
9085569097491194major facilitator family transporterQuickGO ontologyBLASTP
910795911211417hypothetical protein
911777912136360ISPsy5 Orf1QuickGO ontologyBLASTP
912397913374978ISPssy transposaseQuickGO ontologyBLASTP
916047916415369hypothetical proteinBLASTP
9164129177851374hypothetical proteinBLASTP
917806918744939hypothetical proteinBLASTP
918744919160417hypothetical proteinBLASTP
919701920189489hypothetical proteinBLASTP
9204519216921242type III effector HopAJ1QuickGO ontologyBLASTP