Pre_GI: BLASTP Hits

Some Help

Query: NC_010501:1:3081 Pseudomonas putida W619, complete genome

Start: 3081, End: 4184, Length: 1104

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:8394:1222212222133251104Pseudomonas putida KT2440, complete genomerecombination protein F0645
NC_009512:1:3062306241651104Pseudomonas putida F1, complete genomeDNA replication and repair protein RecF0645
NC_010322:1:3844384449471104Pseudomonas putida GB-1 chromosome, complete genomerecombination protein F0636
NC_020209:4768500:4771601477160147727041104Pseudomonas poae RE*1-1-14, complete genomerecombination protein F6e-169593
NC_002516:6255854:3169316942781110Pseudomonas aeruginosa PAO1, complete genomerecombination protein F2e-159561
NC_012560:5338707:2688268837851098Azotobacter vinelandii DJ, complete genomeDNA replication and repair protein ,RecF1e-150532
NC_020829:1:2679267937881110Pseudomonas denitrificans ATCC 13867, complete genomerecombination protein F2e-147522
NC_004337:3590323:3871536387153638726091074Shigella flexneri 2a str. 301, complete genomerecombination protein F4e-65248
NC_020260:3931567:3931567393156739326401074Cronobacter sakazakii Sp291, complete genomerecombination protein F5e-65248
NC_009092:4585784:2684268437661083Shewanella loihica PV-4, complete genomeDNA replication and repair protein RecF2e-64246
NC_015572:1:2684268437571074Methylomonas methanica MC09 chromosome, complete genomeDNA replication and repair protein recF5e-55215
NC_014315:3319865:95019501105891089Nitrosococcus watsoni C-113 chromosome, complete genomeDNA replication and repair protein RecF8e-45181
NC_009446:174951:2169122169122179821071Dichelobacter nodosus VCS1703A, complete genomeDNA replication and repair protein RecF4e-43175
NC_010611:3879190:3027302741091083Acinetobacter baumannii ACICU, complete genomeRecombinational DNA repair ATPase (RecF pathway)1e-42174
NC_010577:1:3044304441381095Xylella fastidiosa M23, complete genomeDNA replication and repair protein RecF7e-38158
NC_010577:2513241:3044304441381095Xylella fastidiosa M23, complete genomeDNA replication and repair protein RecF7e-38158
NC_004556:1:3153315342471095Xylella fastidiosa Temecula1, complete genomerecombination protein F7e-38158
NC_002488:1:3161316142551095Xylella fastidiosa 9a5c, complete genomerecombination protein F1e-37157
NC_002488:2657274:3161316142551095Xylella fastidiosa 9a5c, complete genomerecombination protein F1e-37157
NC_015942:3185193:2979297940371059Acidithiobacillus ferrivorans SS3 chromosome, complete genomeDNA replication and repair protein recF2e-30133
NC_011979:4293859:2952295240461095Geobacter sp. FRC-32, complete genomeDNA replication and repair protein RecF9e-30131
NC_014623:723089:7230897230897245341446Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeDNA replication and repair protein RecF6e-27122
NC_018665:1:3495349546491155Exiguobacterium antarcticum B7 chromosome, complete genomeDNA replication and repair protein recF1e-23111
NC_014152:1:3018301841241107Thermincola sp. JR, complete genomeDNA replication and repair protein RecF4e-23108
NC_010814:4099:2996299641021107Geobacter lovleyi SZ, complete genomeDNA replication and repair protein RecF2e-22107
NC_006177:3549467:2948294840751128Symbiobacterium thermophilum IAM 14863, complete genomeDNA repair and genetic recombination protein3e-22106
NC_013895:66641:9426494264954121149Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeputative recombination protein F3e-22106
NC_007644:3229:3229322943411113Moorella thermoacetica ATCC 39073, complete genomeDNA replication and repair protein RecF3e-22106
NC_018664:1:3163316342841122Clostridium acidurici 9a chromosome, complete genomeDNA replication and repair protein RecF7e-22105
NC_015433:1998427:2013306201330620144001095Streptococcus suis ST3 chromosome, complete genomeDNA replication and repair protein RecF1e-21104
NC_004461:1:3822382249371116Staphylococcus epidermidis ATCC 12228, complete genomerecombination protein F1e-21104
NC_009922:1:3236323643331098Alkaliphilus oremlandii OhILAs, complete genomeDNA replication and repair protein RecF1e-21104
NC_014098:3372000:3292329244041113Bacillus tusciae DSM 2912 chromosome, complete genomeDNA replication and repair protein RecF9e-22104
NC_007498:3655304:2856285639471092Pelobacter carbinolicus DSM 2380, complete genomeDNA replication and repair protein2e-21103
NC_014836:2919508:2792279238231032Desulfurispirillum indicum S5 chromosome, complete genomeDNA replication and repair protein RecF3e-21103
NC_010674:1:3223322343081086Clostridium botulinum B str. Eklund 17B, complete genomeDNA replication and repair protein RecF1e-20100
NC_010723:1:3175317542601086Clostridium botulinum E3 str. Alaska E43, complete genomeDNA replication and repair protein RecF1e-20100
NC_015519:2739347:3080308041741095Tepidanaerobacter sp. Re1 chromosome, complete genomeDNA replication and repair protein recF3e-2099.8
NC_015690:8645500:2964296440701107Paenibacillus mucilaginosus KNP414 chromosome, complete genomeRecF3e-2099.8
NC_009089:1:3029302941441116Clostridium difficile 630, complete genomeDNA replication and repair protein5e-2099
NC_007350:1:4036403651511116Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,DNA repair and genetic recombination protein7e-2098.6
NC_011060:3000067:2883288339921110Pelodictyon phaeoclathratiforme BU-1, complete genomeDNA replication and repair protein RecF2e-1997.4
NC_003030:1:3447344745381092Clostridium acetobutylicum ATCC 824, complete genomerecombination protein F2e-1997.1
NC_015687:1:3447344745381092Clostridium acetobutylicum DSM 1731 chromosome, complete genomerecombination protein F2e-1997.1
NC_015425:2752482:2768847276884727699291083Clostridium botulinum BKT015925 chromosome, complete genomeDNA replication and repair protein RecF2e-1996.7
NC_007929:1805000:3309330944481140Lactobacillus salivarius subsp. salivarius UCC118, complete genomeDNA replication and repair protein2e-1996.7
NC_021184:1:3375337544751101Desulfotomaculum gibsoniae DSM 7213, complete genomerecF protein3e-1996.3
NC_014761:1981435:1996460199646019974941035Oceanithermus profundus DSM 14977 chromosome, complete genomeDNA replication and repair protein recf1e-1894.4
NC_008576:4701930:2711271138591149Magnetococcus sp. MC-1, complete genomeDNA replication and repair protein RecF1e-1894.4
NC_010001:1:3870387049521083Clostridium phytofermentans ISDg, complete genomeDNA replication and repair protein RecF2e-1893.6
NC_014171:1:3300330044271128Bacillus thuringiensis BMB171 chromosome, complete genomerecombination protein F3e-1893.2
NC_012781:4065:2984298440721089Eubacterium rectale ATCC 33656, complete genomeDNA replication and repair protein RecF3e-1892.8
NC_015501:1669521:1685231168523116863461116Porphyromonas asaccharolytica DSM 20707 chromosome, completeDNA replication and repair protein recF4e-1892.8
NC_008262:1:3391339144761086Clostridium perfringens SM101, complete genomeDNA replication and repair protein RecF5e-1892.4
NC_003366:1:3566356646511086Clostridium perfringens str. 13, complete genomerecombination protein F5e-1892.4
NC_008261:1:3567356746521086Clostridium perfringens ATCC 13124, complete genomeDNA replication and repair protein RecF5e-1892.4
NC_012673:1679744:1696312169631216974301119Exiguobacterium sp. AT1b, complete genomeDNA replication and repair protein RecF5e-1892
NC_017208:1:3300330044271128Bacillus thuringiensis serovar chinensis CT-43 chromosome, completerecombination protein F7e-1892
NC_013854:3126385:3127580312758031287641185Azospirillum sp. B510, complete genomeDNA replication and repair protein8e-1891.7
NC_020291:1:3133313342151083Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA replication and repair protein RecF1e-1791.3
NC_015275:1:3052305241341083Clostridium lentocellum DSM 5427 chromosome, complete genomeDNA replication and repair protein RecF2e-1790.5
NC_004557:32094:4842548425495371113Clostridium tetani E88, complete genomerecombination protein F2e-1790.1
NC_011567:1:3339333944781140Anoxybacillus flavithermus WK1, complete genomeRecombinational DNA repair ATPase RecF2e-1790.1
NC_011059:1:2893289340051113Prosthecochloris aestuarii DSM 271, complete genomeDNA replication and repair protein RecF3e-1790.1
NC_015436:1:2895289539741080Spirochaeta coccoides DSM 17374 chromosome, complete genomeDNA replication and repair protein recF3e-1789.7
NC_009495:1:2998299841011104Clostridium botulinum A str. ATCC 3502 chromosome, complete genomerecombination protein F4e-1789.4
NC_010718:1:3167316743271161Natranaerobius thermophilus JW/NM-WN-LF, complete genomeDNA replication and repair protein RecF5e-1789
NC_008593:2527064:2543402254340225444871086Clostridium novyi NT, complete genomerecF protein5e-1789
NC_012563:1:3164316442581095Clostridium botulinum A2 str. Kyoto, complete genomeDNA replication and repair protein RecF5e-1789
NC_009697:1:3007300741011095Clostridium botulinum A str. ATCC 19397 chromosome, completerecombination protein F5e-1789
NC_009698:1:3007300741011095Clostridium botulinum A str. Hall chromosome, complete genomerecombination protein F5e-1789
NC_015846:1065692:1064602106460210657051104Capnocytophaga canimorsus Cc5 chromosome, complete genomeDNA replication and repair protein recF5e-1789
NC_010516:1:3035303541291095Clostridium botulinum B1 str. Okra, complete genomeDNA replication and repair protein RecF4e-1789
NC_012778:2997:2997299740881092Eubacterium eligens ATCC 27750, complete genomeDNA replication and repair protein RecF7e-1788.6
NC_009699:1:3008300841021095Clostridium botulinum F str. Langeland chromosome, complete genomerecombination protein F1e-1687.8
NC_017297:1:3008300841021095Clostridium botulinum F str. 230613 chromosome, complete genomeDNA replication and repair protein RecF1e-1687.8
NC_021182:1:3446344645461101Clostridium pasteurianum BC1, complete genomerecF protein2e-1687
NC_012658:1:3171317142651095Clostridium botulinum Ba4 str. 657 chromosome, complete genomerecombination protein F3e-1686.3
NC_013170:1:2977297741131137Cryptobacterium curtum DSM 15641, complete genomerecF protein5e-1685.5
NC_014392:2513529:5071507161321062Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeDNA replication and repair protein RecF6e-1685.5
NC_010520:1:3012301241061095Clostridium botulinum A3 str. Loch Maree, complete genomeDNA replication and repair protein RecF7e-1685.1
NC_015565:2879603:2945294540481104Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDNA replication and repair protein recF1e-1584.3
NC_009706:1:3033303341271095Clostridium kluyveri DSM 555 chromosome, complete genomerecombination protein F2e-1583.6
NC_011837:1:3024302441271104Clostridium kluyveri NBRC 12016, complete genomerecombination protein F2e-1583.6
NC_014150:1099507:1104826110482611058931068Brachyspira murdochii DSM 12563 chromosome, complete genomeDNA replication and repair protein RecF3e-1583.2
NC_008578:2431074:3097309742121116Acidothermus cellulolyticus 11B, complete genomeDNA replication and repair protein RecF4e-1582.4
NC_002932:2142000:2153826215382621549321107Chlorobium tepidum TLS, complete genomerecombination/replication protein RecF6e-1582
NC_007677:71532:7153271532727701239Salinibacter ruber DSM 13855, complete genomeDNA replication and repair protein RecF2e-1480.5
NC_014378:525717:3311331144351125Acetohalobium arabaticum DSM 5501 chromosome, complete genomeDNA replication and repair protein RecF2e-1480.1
NC_014378:4428:3311331144351125Acetohalobium arabaticum DSM 5501 chromosome, complete genomeDNA replication and repair protein RecF2e-1480.1
NC_013171:1:3184318442631080Anaerococcus prevotii DSM 20548, complete genomeDNA replication and repair protein RecF3e-1479.7
NC_014032:71724:7172471724729621239Salinibacter ruber M8 chromosome, complete genomeDNA replication and repair protein RecF4e-1479.3
NC_014221:169996:1925671925671936251059Truepera radiovictrix DSM 17093 chromosome, complete genomeDNA replication and repair protein RecF4e-1479.3
NC_014328:1:3117311742171101Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative DNA replication and repair protein RecF7e-1478.6
NC_011757:5742290:4428442855851158Methylobacterium chloromethanicum CM4, complete genomeDNA replication and repair protein RecF1e-1377.8
NC_010172:5447189:3032303241861155Methylobacterium extorquens PA1, complete genomeDNA replication and repair protein RecF3e-1376.6
NC_017221:2268276:2268743226874322699811239Bifidobacterium longum subsp. longum KACC 91563 chromosome,recombination protein RecF7e-1375.1
NC_014656:1634397:1637135163713516383731239Bifidobacterium longum subsp. longum BBMN68 chromosome, completerecf7e-1375.1
NC_015052:2383865:3391339146291239Bifidobacterium longum subsp. infantis 157F, complete genomerecombination protein RecF7e-1375.1
NC_014393:1:3443344345371095Clostridium cellulovorans 743B chromosome, complete genomeDNA replication and repair protein RecF8e-1375.1
NC_019907:46994:6656866568677011134Liberibacter crescens BT-1 chromosome, complete genomeDNA recombination and repair protein RecF1e-1273.9
NC_014654:1:3111311142321122Halanaerobium sp. 'sapolanicus' chromosome, complete genomeDNA replication and repair protein RecF3e-1273.2
NC_012985:465354:4962314962314973581128Candidatus Liberibacter asiaticus str. psy62, complete genomerecombination protein F5e-1272.4
NC_011661:1542335:1560523156052315616021080Dictyoglomus turgidum DSM 6724, complete genomeDNA replication and repair protein RecF7e-1272
NC_010816:1660066:1662804166280416639911188Bifidobacterium longum DJO10A, complete genomeRecombinational DNA repair ATPase6e-1272
NC_015067:2371428:3442344246291188Bifidobacterium longum subsp. longum JCM 1217, complete genomerecombination protein RecF6e-1272
NC_004307:1620500:1621137162113716223241188Bifidobacterium longum NCC2705, complete genomerecombination protein RecF6e-1272
NC_011297:1357947:1376151137615113772301080Dictyoglomus thermophilum H-6-12, complete genomeDNA replication and repair protein RecF1e-1171.2
NC_015714:1:2702270238351134Treponema paraluiscuniculi Cuniculi A chromosome, complete genomerecombination protein F2e-1170.1
NC_018750:3964784:3967638396763839687591122Streptomyces venezuelae ATCC 10712, complete genomeDNA recombination and repair protein RecF3e-1169.7
NC_008541:4679022:4061406152661206Arthrobacter sp. FB24 chromosome 1, complete sequenceDNA replication and repair protein RecF8e-1168.6
NC_008711:4579997:4132413253311200Arthrobacter aurescens TC1, complete genomeputative DNA replication and repair protein RecF7e-1168.6
NC_003888:4251867:4266442426644242675631122Streptomyces coelicolor A3(2), complete genomerecombination protein F7e-1168.6
NC_016843:1:2701270138341134Treponema pallidum subsp. pertenue str. Gauthier chromosome,recombination protein F9e-1168.2
NC_016842:1:2701270138341134Treponema pallidum subsp. pertenue str. SamoaD chromosome, completerecombination protein F9e-1168.2
NC_015953:3684065:3687060368706036881901131Streptomyces sp. SirexAA-E chromosome, complete genomeDNA replication and repair protein RecF9e-1168.2
NC_005956:152497:1616811616811628141134Bartonella henselae str. Houston-1, complete genomerecombination protein F1e-1068.2
NC_011886:4376261:4290429054981209Arthrobacter chlorophenolicus A6, complete genomeDNA replication and repair protein RecF1e-1067.8
NC_020300:131782:1412031412031423451143Bartonella australis Aust/NH1, complete genomerecombination protein F2e-1067.4
NC_017268:1:2761276138341074Treponema pallidum subsp. pallidum str. Chicago chromosome,DNA replication and repair protein RecF2e-1067.4
NC_013929:5135285:5135285513528551364091125Streptomyces scabiei 87.22 chromosome, complete genomeDNA replication protein1e-1067.4
NC_015145:4232283:4506450657171212Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeDNA replication and repair protein RecF6e-1065.5
NC_015703:6295500:6314430631443063155301101Runella slithyformis DSM 19594 chromosome, complete genomeDNA replication and repair protein recF2e-0963.9
NC_014550:3839389:3442344246051164Arthrobacter arilaitensis Re117, complete genomeDNA replication and repair protein RecF3e-0963.2
NC_009952:3522370:3547348354734835484331086Dinoroseobacter shibae DFL 12, complete genomeDNA replication and repair protein RecF4e-0962.8
NC_014218:4424:3195319544271233Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeDNA replication and repair protein RecF5e-0962.4
NC_012803:3691:3691369149051215Micrococcus luteus NCTC 2665, complete genomeDNA replication and repair protein RecF9e-0961.6
NC_007164:2446879:3596359648731278Corynebacterium jeikeium K411, complete genomeDNA replication and repair protein RecF1e-0861.2
NC_014363:2035141:2043220204322020443081089Olsenella uli DSM 7084 chromosome, complete genomeDNA replication and repair protein RecF1e-0861.2
NC_017043:735150:7544397544397555211083Rickettsia montanensis str. OSU 85-930 chromosome, complete genomerecombination protein F1e-0860.8
NC_015673:1:3542354249721431Corynebacterium resistens DSM 45100 chromosome, complete genomeDNA replication and repair protein2e-0860.8
NC_014318:3691:4592459257461155Amycolatopsis mediterranei U32 chromosome, complete genomeDNA replication and repair protein RecF3e-0860.1
NC_017186:3694:4592459257461155Amycolatopsis mediterranei S699 chromosome, complete genomerecombination protein F3e-0860.1
NC_013204:3613824:4350435056121263Eggerthella lenta DSM 2243, complete genomeDNA replication and repair protein RecF3e-0860.1
NC_015709:1769806:1769806176980617709511146Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeDNA replication and repair protein RecF3e-0860.1
NC_012633:12000:3240632406334881083Rickettsia africae ESF-5, complete genomeDNA replication and repair protein RecF4e-0859.7
NC_006085:2544421:4227422754111185Propionibacterium acnes KPA171202, complete genomerecombination protein F8e-0858.5
NC_016639:13188:3575435754368361083Rickettsia slovaca 13-B chromosome, complete genomeDNA replication and repair protein RecF8e-0858.5
NC_017065:13188:3575135751368331083Rickettsia slovaca str. D-CWPP chromosome, complete genomerecombination protein F8e-0858.5
NC_014210:5752651:5627562767601134Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,DNA replication and repair protein RecF8e-0858.5
NC_005955:139907:1491031491031502361134Bartonella quintana str. Toulouse, complete genomerecombination protein F7e-0858.5
NC_016915:13927:3506235062361441083Rickettsia rickettsii str. Hlp#2 chromosome, complete genomerecombination protein F7e-0858.5
NC_010263:13826:3501135011360931083Rickettsia rickettsii str. Iowa, complete genomeDNA replication and repair protein7e-0858.5
NC_009882:13826:3501935019361011083Rickettsia rickettsii str. 'Sheila Smith', complete genomerecombination protein F7e-0858.5
NC_016908:13826:3502135021361031083Rickettsia rickettsii str. Colombia chromosome, complete genomerecombination protein F7e-0858.5
NC_016909:16465:3501335013360951083Rickettsia rickettsii str. Arizona chromosome, complete genomerecombination protein F7e-0858.5
NC_016911:13826:3501035010360921083Rickettsia rickettsii str. Hauke chromosome, complete genomerecombination protein F7e-0858.5
NC_016914:13826:3509835098361801083Rickettsia rickettsii str. Hino chromosome, complete genomerecombination protein F7e-0858.5
NC_016930:11721:3330333303343851083Rickettsia philipii str. 364D chromosome, complete genomerecombination protein F7e-0858.5
NC_014039:2479500:4202420254071206Propionibacterium acnes SK137 chromosome, complete genomeDNA recombination and repair protein RecF9e-0858.2
NC_016931:38350:5708057080581621083Rickettsia massiliae str. AZT80 chromosome, complete genomerecombination protein F9e-0858.2
NC_015312:1:4026402651681143Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeDNA replication and repair protein recF1e-0757.8
NC_013093:1:4728472858431116Actinosynnema mirum DSM 43827, complete genomeDNA replication and repair protein RecF3e-0756.6
NC_013595:10329633:5885588570571173Streptosporangium roseum DSM 43021, complete genomeRecombinational DNA repair ATPase (RecF pathway)- like protein3e-0756.6
NC_014006:850763:9037189037189047881071Sphingobium japonicum UT26S chromosome 1, complete genomeDNA replication and repair protein RecF6e-0755.5
NC_007333:3626510:4988498861211134Thermobifida fusca YX, complete genomerecombination protein F7e-0755.1
NC_007333:1:4988498861211134Thermobifida fusca YX, complete genomerecombination protein F7e-0755.1
NC_015564:4727630:3572357247651194Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeDNA replication and repair protein recF8e-0755.1
NC_017278:258921:2839422839422849731032Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein2e-0653.5
NC_006087:1:4160416053171158Leifsonia xyli subsp. xyli str. CTCB07, complete genomerecombination protein F6e-0652