Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:1 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4408405ribonuclease PQuickGO ontologyBLASTP
42255613550S ribosomal protein L34QuickGO ontologyBLASTP
115226841533chromosomal replication initiation proteinQuickGO ontologyBLASTP
272538281104DNA polymerase III subunit betaQuickGO ontologyBLASTP
384449471104recombination protein FQuickGO ontologyBLASTP
495273722421DNA gyrase subunit BQuickGO ontologyBLASTP
82098847639hypothetical proteinBLASTP
8828107861959integrase catalytic subunitQuickGO ontologyBLASTP
1078311742960AAA ATPaseQuickGO ontologyBLASTP
11818137341917hypothetical proteinBLASTP
1379114150360hypothetical proteinBLASTP
1452214854333hypothetical proteinBLASTP
1495215407456hypothetical proteinBLASTP
1539716176780hypothetical proteinBLASTP
16186173011116copper resistance BQuickGO ontologyBLASTP
1729117614324hypothetical proteinBLASTP
17629195871959CopA family copper resistance proteinQuickGO ontologyBLASTP