Pre_GI: BLASTP Hits

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Query: NC_003063:304962:325733 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 325733, End: 325981, Length: 249

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1743939:174877717487771749166390Agrobacterium tumefaciens str. C58 chromosome linear, completeIS426 transposase2e-39160
NC_003064:22535:296832968330060378Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein5e-31132
NC_003306:22228:293762937629753378Agrobacterium tumefaciens str. C58 plasmid AT, complete sequenceIS426 transposase5e-31132
NC_009428:725871:751687751687752082396Rhodobacter sphaeroides ATCC 17025 chromosome, complete genometransposase IS3/IS911 family protein5e-2096.3
NC_002937:2068117:211144021114402111838399Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeISDvu2, transposase OrfA6e-1992.8
NC_002937:2263763:227883222788322279230399Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeISDvu2, transposase OrfA6e-1992.8
NC_008740:3520500:352477035247703525147378Marinobacter aquaeolei VT8, complete genometransposase IS3/IS911 family protein6e-1889.4
NC_014121:489500:514523514523514918396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-1581.3
NC_014121:677799:685988685988686383396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase5e-1579.7
NC_014121:2090630:209890420989042099299396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-1579.7
NC_014121:5000069:500077350007735001168396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase5e-1579.7
NC_014121:1682638:171577017157701716165396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase5e-1579.7
NC_014121:4299500:431649143164914316886396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase5e-1579.7
NC_014121:2330451:234332723433272343722396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-1579.7
NC_014121:3553809:356262935626293563024396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-1579.7
NC_014107:171170:191189191189191584396Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,IS2 transposase orfA5e-1579.7
NC_009649:94871:103106103106103501396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein5e-1579.7
NC_009649:94871:948719487195266396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein5e-1579.7
NC_009649:16907:300763007630471396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein5e-1579.7
NC_016002:2037374:206991220699122070217306Pseudogulbenkiania sp. NH8B, complete genometransposase7e-1579.3
NC_007651:1620000:164870416487041649069366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-1477.4
NC_007650:84140:105871105871106236366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase2e-1477.4
NC_007651:1726472:173842317384231738788366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-1477.4
NC_007650:420745:440579440579440944366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase2e-1477.4
NC_007651:3064530:315599031559903156355366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-1477.4
NC_016812:258500:290263290263290697435Sinorhizobium fredii HH103, complete genome4e-1477
NC_015740:3486226:349575634957563496061306Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase1e-1375.5
NC_015740:110633:118976118976119281306Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase1e-1375.5
NC_010511:7024412:704697670469767047395420Methylobacterium sp. 4-46 chromosome, complete genometransposase IS3/IS911 family protein1e-1375.1
NC_014307:1131241:114283311428331143228396Ralstonia solanacearum CFBP2957 chromosome, complete genometransposase (orfa protein )1e-1374.7
NC_003295:2507850:253131225313122531578267Ralstonia solanacearum GMI1000, complete genomeISRSO10-TRANSPOSASE ORFA PROTEIN3e-1373.9
NC_003047:3360000:341062234106223411014393Sinorhizobium meliloti 1021, complete genomeTRANSPOSASE FOR INSERTION SEQUENCE ELEMENT ISRM14e-1373.6
NC_012721:1986436:199367719936771994042366Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase IS3/IS9114e-1373.6
NC_010508:1980689:199160619916061991971366Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencetransposase IS3/IS911 family protein4e-1373.6
NC_003296:556836:578373578373578741369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN4e-1373.6
NC_016002:1048420:105494610549461055332387Pseudogulbenkiania sp. NH8B, complete genometransposase IS3/IS911 family protein4e-1373.2
NC_015593:1587684:159437815943781594785408Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completetransposase IS3/IS911 family protein6e-1372.8
NC_014311:1635408:165416616541661654531366Ralstonia solanacearum PSI07 chromosome, complete genometransposase9e-1372.4
NC_014311:3076519:310981731098173110182366Ralstonia solanacearum PSI07 chromosome, complete genometransposase9e-1372.4
NC_014311:1545175:155820715582071558596390Ralstonia solanacearum PSI07 chromosome, complete genometransposase (ORFA protein )8e-1372.4
NC_014311:2606434:261257926125792612968390Ralstonia solanacearum PSI07 chromosome, complete genometransposase (ORFA protein )8e-1372.4
NC_011083:4547825:460386946038694604237369Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transposase8e-1372.4
NC_012721:1635999:164431916443191644684366Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase7e-1372.4
NC_012724:2547500:257322125732212573586366Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase7e-1372.4
NC_014310:279912:286062286062286451390Ralstonia solanacearum PSI07 megaplasmid, complete sequencetransposase2e-1271.2
NC_015136:1101725:112602711260271126422396Burkholderia sp. CCGE1001 chromosome 1, complete sequencetransposase IS3/IS911 family protein2e-1271.2
NC_015381:1318818:133375213337521334147396Burkholderia gladioli BSR3 chromosome 1, complete sequencePutative transposase2e-1271.2
NC_014117:132524:163887163887164288402Burkholderia sp. CCGE1002 chromosome chromosome 1, completetransposase IS3/IS911 family protein2e-1271.2
NC_014118:1528851:154024615402461540647402Burkholderia sp. CCGE1002 chromosome chromosome 2, completetransposase IS3/IS911 family protein2e-1271.2
NC_020209:4943734:496661549666154967007393Pseudomonas poae RE*1-1-14, complete genomeputative transposase2e-1270.9
NC_020209:4943734:496484449648444965236393Pseudomonas poae RE*1-1-14, complete genomeputative transposase2e-1270.9
NC_020209:1949500:196784319678431968235393Pseudomonas poae RE*1-1-14, complete genomeputative transposase2e-1270.9
NC_016626:1699500:171254517125451712931387Burkholderia sp. YI23 plasmid byi_1p, complete sequencetransposase IS3/IS911 family protein8e-1269.3
NC_003296:673790:707962707962708330369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN9e-1268.9
NC_014722:771483:781559781559781804246Burkholderia rhizoxinica HKI 454, complete genometransposase1e-1168.6
NC_007973:2150962:216442321644232164824402Ralstonia metallidurans CH34 chromosome 1, complete sequencetransposase IS3/IS9111e-1168.2
NC_007973:2773427:278083427808342781235402Ralstonia metallidurans CH34 chromosome 1, complete sequencetransposase IS3/IS9111e-1168.2
NC_007384:1320287:134114013411401341412273Shigella sonnei Ss046, complete genomeIS2 ORF12e-1167.8
NC_008258:2542863:255648125564812556846366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF13e-1167.4
NC_007384:3741708:376003237600323760397366Shigella sonnei Ss046, complete genomeIS2 ORF13e-1167.4
NC_007384:2933625:293993329399332940298366Shigella sonnei Ss046, complete genomeIS2 ORF13e-1167.4
NC_007606:1209132:121672712167271217092366Shigella dysenteriae Sd197, complete genomeIS2 ORF13e-1167.4
NC_009790:42112:417894178942154366Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS2, transposase orfA3e-1167.4
AC_000091:1083798:110649611064961106861366Escherichia coli W3110 DNA, complete genomeIS2 element protein3e-1167.4
NC_007384:3151344:316597131659713166336366Shigella sonnei Ss046, complete genomeIS2 ORF13e-1167.4
NC_007384:3741708:375466937546693755034366Shigella sonnei Ss046, complete genomeIS2 ORF13e-1167.4
NC_009788:16360:288402884029205366Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS2, transposase orfA3e-1167.4
NC_008258:1934479:195505819550581955423366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF13e-1167.4
NC_007613:4119771:413386541338654134230366Shigella boydii Sb227, complete genomeIS2 ORF13e-1167.4
NC_012759:2862807:288240528824052882770366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein3e-1167.4
NC_012759:3063285:307135730713573071722366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein3e-1167.4
NC_017328:3088907:311932431193243119689366Shigella flexneri 2002017 chromosome, complete genomeIS2 ORF13e-1167.4
NC_017319:192482:218309218309218674366Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceinsertion element IS2 repressor InsA3e-1167.4
NC_017319:155958:172246172246172611366Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceinsertion element IS2 repressor InsA3e-1167.4
NC_016822:3946500:395422239542223954587366Shigella sonnei 53G, complete genomeIS2 repressor TnpA3e-1167.4
NC_016822:3282654:329986332998633300228366Shigella sonnei 53G, complete genomeIS2 repressor TnpA3e-1167.4
NC_016822:3065426:307123730712373071602366Shigella sonnei 53G, complete genomeIS2 repressor TnpA3e-1167.4
NC_016822:1431200:146961514696151469980366Shigella sonnei 53G, complete genomeIS2 repressor TnpA3e-1167.4
NC_016822:1431200:145416914541691454534366Shigella sonnei 53G, complete genomeIS2 repressor TnpA3e-1167.4
NC_013361:5319497:532925553292555329620366Escherichia coli O26:H11 str. 11368 chromosome, complete genomeinsertion sequence 2 OrfA protein3e-1167.4
NC_012759:4433500:443503044350304435395366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein3e-1167.4
NC_010473:3069529:308912730891273089537411Escherichia coli str. K-12 substr. DH10B, complete genomeIS2 insertion element repressor InsA3e-1167
NC_010473:4596500:459805845980584598468411Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; IS2 insertion element repressor InsA3e-1167
AC_000091:2976293:299589129958912996301411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA3e-1167
NC_010498:1659328:166385016638501664260411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA3e-1167
NC_004337:3590323:360478136047813605191411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein3e-1167
NC_010473:3273882:328190932819093282319411Escherichia coli str. K-12 substr. DH10B, complete genomeIS2 insertion element repressor InsA3e-1167
NC_004337:2747917:277055127705512770961411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein3e-1167
NC_000913:4494773:449625044962504496660411Escherichia coli K12, complete genomeKpLE2 phage-like element; IS2 insertion element repressor InsA3e-1167
NC_010498:1210145:121338512133851213795411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA3e-1167
NC_015424:2462522:247931924793192479633315Aeromonas veronii B565 chromosome, complete genomeIS2 transposase3e-1167
NC_013446:4511602:452805045280504528328279Comamonas testosteroni CNB-2, complete genomehypothetical protein3e-1167
NC_006625:63342:672026720267567366Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceinsertion sequence 2 OrfA protein4e-1167
NC_000913:3176000:318416431841643184574411Escherichia coli K12, complete genomeIS2 insertion element repressor InsA3e-1167
NC_010498:1094000:110194511019451102355411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA3e-1167
NC_000913:2975659:299525729952572995667411Escherichia coli K12, complete genomeIS2 insertion element repressor InsA3e-1167
NC_004337:3049118:307957030795703079980411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein3e-1167
NC_004741:3041294:307041130704113070821411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein3e-1167
NC_017328:3935185:394041639404163940826411Shigella flexneri 2002017 chromosome, complete genomeIS2 orfA3e-1167
NC_004337:2035945:203594520359452036355411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein3e-1167
NC_004337:3590323:391475739147573915167411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein3e-1167
NC_004851:157675:171135171135171545411Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceinsertion sequence 2 OrfA protein3e-1167
NC_004741:4160500:416881241688124169222411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein3e-1167
NC_004741:2009769:201261820126182013028411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein3e-1167
AC_000091:4501430:450290745029074503317411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA3e-1167
AC_000091:3180275:318479831847983185208411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA3e-1167
NC_011750:1849561:186742018674201867830411Escherichia coli IAI39 chromosome, complete genomeinsertion sequence 2 OrfA protein3e-1167
NC_007941:11319:405034050340913411Escherichia coli UTI89 plasmid pUTI89, complete sequenceIS2 OrfA3e-1167
NC_010515:2691000:270750927075092707910402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein5e-1166.6
NC_010515:2111691:212698321269832127384402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein5e-1166.6
NC_010515:2111691:217327521732752173676402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein5e-1166.6
NC_007651:2166000:217506121750612175462402Burkholderia thailandensis E264 chromosome I, complete sequencetransposase5e-1166.6
NC_013446:4281250:428656042865604286946387Comamonas testosteroni CNB-2, complete genometransposase IS3/IS9114e-1166.6
NC_013446:2655955:266894526689452669331387Comamonas testosteroni CNB-2, complete genomeisrso10-transposase orfa protein4e-1166.6
NC_013446:2820000:284321228432122843598387Comamonas testosteroni CNB-2, complete genometransposase IS3/IS9114e-1166.6
NC_004337:3590323:383131238313123831722411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein1e-1065.5
NC_004337:3590323:381541938154193815829411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein1e-1065.5
NC_008258:3224721:324594132459413246306366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF19e-1165.5
NC_014931:2511423:252114325211432521535393Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein9e-1165.5
NC_014931:5573942:558062455806245581016393Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein9e-1165.5
NC_014931:1642179:165538916553891655781393Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein9e-1165.5
NC_008061:2106848:212219421221942122595402Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetransposase IS3/IS9111e-1065.1
NC_008543:127675:147175147175147576402Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetransposase IS3/IS911 family protein1e-1065.1
NC_007613:1353500:135903313590331359398366Shigella boydii Sb227, complete genomeIS2 ORF11e-1065.1
NC_013364:3701895:375328337532833753528246Escherichia coli O111:H- str. 11128, complete genome1e-1065.1
NC_009837:92000:107550107550107960411Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceinsertion sequence 2 OrfA protein2e-1064.7
NC_009837:127000:127112127112127522411Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceinsertion sequence 2 OrfA protein2e-1064.7
NC_013364:2672837:269553326955332695898366Escherichia coli O111:H- str. 11128, complete genomeputative IS2 repressor protein InsA2e-1064.3
NC_008258:3550500:356523735652373565602366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF13e-1063.5
NC_015138:4205986:422258542225854222971387Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetransposase IS3/IS911 family protein1e-0961.6
NC_007434:2386036:240400224040022404466465Burkholderia pseudomallei 1710b chromosome I, complete sequencetransposase1e-0961.6
NC_006350:1938631:198010519801051980470366Burkholderia pseudomallei K96243 chromosome 1, complete sequencetransposase2e-0961.2
NC_010515:1205258:120952112095211209778258Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein8e-0959.3
NC_014931:4985500:4989767498976749910501284Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein2e-0857.8
NC_014923:5868000:587673658767365876948213Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completehypothetical protein9e-0855.8
NC_015675:6423000:643140764314076431619213Mesorhizobium opportunistum WSM2075 chromosome, complete genomehypothetical protein9e-0855.8
NC_019973:5797000:580569658056965805908213Mesorhizobium australicum WSM2073, complete genomehypothetical protein9e-0855.8
NC_014931:4210029:421321742132174213483267Variovorax paradoxus EPS chromosome, complete genome1e-0755.1
NC_014931:4210029:421789242178924218239348Variovorax paradoxus EPS chromosome, complete genome2e-0754.7
NC_016822:1304398:132484513248451325030186Shigella sonnei 53G, complete genomeIS2 repressor TnpA1e-0651.6
NC_010660:33109:463864638646571186Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence1e-0651.6
NC_010498:3291344:329941632994163299715300Escherichia coli SMS-3-5, complete genome4e-0650.1
NC_007650:832507:839851839851840036186Burkholderia thailandensis E264 chromosome II, complete sequencetransposase9e-0648.9