Pre_GI Gene

Some Help

Host: NC_003306 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003306:22228 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
22228241261899hypothetical proteinBLASTP
24428261611734hypothetical proteinBLASTP
26191278911701ATP-dependent DNA helicaseQuickGO ontologyBLASTP
2794028194255IS21 family transposase fragmentQuickGO ontologyBLASTP
2829428704411hypothetical proteinBLASTP
2882529379555IS 426 transposaseQuickGO ontologyBLASTP
2937629753378IS426 transposaseQuickGO ontologyBLASTP
2992430694771hypothetical protein
3085531397543hypothetical protein
31458324771020hypothetical proteinBLASTP
3277233533762hypothetical proteinBLASTP
33565346351071hypothetical proteinBLASTP
3523035457228hypothetical protein
3554136428888hypothetical proteinBLASTP
3647936865387hypothetical proteinBLASTP
3691837697780hypothetical protein
39240404211182hypothetical proteinBLASTP
4049541397903hypothetical proteinBLASTP
4139442281888partitioning proteinQuickGO ontologyBLASTP
42278437951518recombinaseQuickGO ontologyBLASTP
4389644303408hypothetical proteinBLASTP
44352454791128hypothetical proteinBLASTP
4546046200741hypothetical proteinBLASTP
4655746904348hypothetical protein
4690547141237hypothetical proteinBLASTP
4722648002777exodeoxyribonuclease IIIQuickGO ontologyBLASTP