Pre_GI: BLASTP Hits

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Query: NC_010658:1593137:1603816 Shigella boydii CDC 3083-94, complete genome

Start: 1603816, End: 1604460, Length: 645

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1696831:1708718170871817098901173Shigella sonnei Ss046, complete genomeputative enzyme6e-124442
NC_008258:1750964:1759284175928417604411158Shigella flexneri 5 str. 8401, complete genomeputative enzyme8e-124442
NC_016822:1781644:1791691179169117928481158Shigella sonnei 53G, complete genomehypothetical protein8e-124442
NC_004741:1792442:1797701179770117988581158Shigella flexneri 2a str. 2457T, complete genomeputative enzyme8e-124442
NC_011751:1770376:1777602177760217787591158Escherichia coli UMN026 chromosome, complete genomehypothetical protein7e-124442
AP010958:1711656:1722335172233517234921158Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein7e-124442
NC_011750:1849561:1856788185678818579451158Escherichia coli IAI39 chromosome, complete genomehypothetical protein7e-124442
NC_011415:1669484:1676710167671016778671158Escherichia coli SE11 chromosome, complete genomehypothetical protein7e-124442
NC_013353:1711656:1722335172233517234921158Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein7e-124442
NC_007946:1632025:1639251163925116404231173Escherichia coli UTI89, complete genomehypothetical protein YdeM4e-123440
NC_008253:1534840:1542066154206615432231158Escherichia coli 536, complete genomehypothetical protein YdeM3e-123440
NC_002655:1966464:1986423198642319875951173Escherichia coli O157:H7 EDL933, complete genomeputative enzyme3e-123440
NC_010498:1659328:1671347167134716725041158Escherichia coli SMS-3-5, complete genomeradical SAM domain-containing protein3e-123440
AC_000091:1574000:1581347158134715825041158Escherichia coli W3110 DNA, complete genomehypothetical protein4e-123439
NC_013941:1894496:1905175190517519063471173Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-123439
NC_011742:1574036:1581262158126215824191158Escherichia coli S88 chromosome, complete genomehypothetical protein5e-123439
NC_008563:1620943:1628169162816916293261158Escherichia coli APEC O1, complete genomehypothetical protein5e-123439
NC_007613:1533024:1546090154609015472621173Shigella boydii Sb227, complete genomeputative enzyme6e-123439
NC_004431:1754627:1765305176530517664771173Escherichia coli CFT073, complete genomeHypothetical protein ydeM7e-123439
NC_013364:1902761:1913440191344019145971158Escherichia coli O111:H- str. 11128, complete genomehypothetical protein7e-123439
NC_013361:2047170:2057849205784920590061158Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein8e-123439
NC_000913:1570431:1577657157765715788141158Escherichia coli K12, complete genomehypothetical protein4e-123439
NC_010468:2345781:2363076236307623642331158Escherichia coli ATCC 8739, complete genomeRadical SAM domain protein4e-123439
NC_009800:1589000:1596456159645615976131158Escherichia coli HS, complete genomeradical SAM domain protein4e-123439
NC_010473:1661000:1668252166825216694091158Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein4e-123439
NC_012759:1462490:1469716146971614708731158Escherichia coli BW2952 chromosome, complete genomehypothetical protein4e-123439
NC_012947:2228235:2246112224611222472691158Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeradical SAM protein4e-123439
NC_012967:1546000:1553584155358415547411158Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein4e-123439
NC_002695:2091890:2100877210087721020341158Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-123439
NC_011353:2004800:2015478201547820166351158Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeradical SAM domain-containing protein4e-123439
NC_013008:2007228:2014454201445420156111158Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-123439
NC_011601:1675000:1682279168227916834361158Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein1e-122438
NC_016902:2395578:2416138241613824172951158Escherichia coli KO11FL chromosome, complete genomeradical SAM protein2e-122437
NC_011748:1684777:1692003169200316931601158Escherichia coli 55989, complete genomehypothetical protein2e-122437
CP002185:1681327:1688553168855316897101158Escherichia coli W, complete genomeconserved protein2e-122437
CP002516:2395578:2416138241613824172951158Escherichia coli KO11, complete genomeRadical SAM domain protein2e-122437
NC_009801:1678790:1689469168946916906261158Escherichia coli E24377A, complete genomeradical SAM domain protein2e-122437
CU928145:1684777:1692003169200316931601158Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein2e-122437
NC_011741:1579375:1586601158660115877581158Escherichia coli IAI1 chromosome, complete genomehypothetical protein1e-121435
CU928160:1579375:1586601158660115877581158Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein1e-121435
NC_013421:801542:8033468033468045691224Pectobacterium wasabiae WPP163, complete genomeRadical SAM domain protein4e-41167
NC_012917:2786283:2794102279410227953251224Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeRadical SAM domain protein2e-39162
NC_010067:1116148:1129362112936211305941233Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-38158
NC_010102:25893:3738037380385761197Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-36152
NC_010067:2881448:2884562288456228857881227Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-35148
NC_019908:2247956:2260274226027422615091236Brachyspira pilosicoli P43/6/78 chromosome, complete genomearylsulfatase activating protein AslB3e-35148
NC_014330:952500:9559639559639571981236Brachyspira pilosicoli 95/1000 chromosome, complete genomearylsulfatase activating protein AslB3e-35148
NC_016832:25807:4172341723429101188Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Chondroitin sulfate/heparin utilization regulation protein7e-35147
NC_004631:25807:4172041720429101191Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible sulfatase regulatory protein7e-35147
NC_003198:25807:4172041720429101191Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible sulfatase regulatory protein7e-35147
NC_017243:554500:5667575667575679891233Brachyspira intermedia PWS/A chromosome, complete genomearylsulfatase activating protein AslB8e-35146
NC_006511:25796:4169241692428791188Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible sulfatase regulatory protein3e-34145
NC_011080:25751:4171741717429041188Salmonella enterica subsp. enterica serovar Newport str. SL254,chondroitin sulfate/heparin utilization regulation protein3e-34145
NC_011147:25836:4173241732429191188Salmonella enterica subsp. enterica serovar Paratyphi A strsulfatase regulatory protein3e-34145
NC_016860:25758:4172641726429131188Salmonella enterica subsp. enterica serovar Typhimurium strputative sulfatase regulator protein3e-34145
NC_003197:25803:4172341723429131191Salmonella typhimurium LT2, complete genomeputative arylsulfatase regulator3e-34145
NC_011205:25805:4172141721429111191Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853chondroitin sulfate/heparin utilization regulation protein3e-34145
NC_011274:25692:4160841608427981191Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91sulfatase regulatory protein3e-34145
NC_011294:25569:4147741477426671191Salmonella enterica subsp. enterica serovar Enteritidis strsulfatase regulatory protein3e-34145
NC_016810:25803:4172341723429131191Salmonella enterica subsp. enterica serovar Typhimurium strsulfatase regulatory protein3e-34145
NC_016831:25760:4172141721429111191Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative sulfatase regulatory protein3e-34145
NC_016856:25803:4172341723429131191Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative arylsulfatase regulator3e-34145
NC_016857:25803:4172341723429131191Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative arylsulfatase regulator3e-34145
NC_016863:25804:4172441724429141191Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative arylsulfatase regulator3e-34145
NC_017046:25758:4172341723429131191Salmonella enterica subsp. enterica serovar Typhimurium str. 798sulfatase regulatory protein3e-34145
NC_014218:1619982:1634618163461816358711254Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeRadical SAM domain protein2e-34145
NC_011149:25760:4172341723429101188Salmonella enterica subsp. enterica serovar Agona str. SL483,chondroitin sulfate/heparin utilization regulation protein6e-34144
NC_011094:25762:4172241722429121191Salmonella enterica subsp. enterica serovar Schwarzengrund strchondroitin sulfate/heparin utilization regulation protein9e-34143
NC_015164:1646753:1660453166045316616731221Bacteroides salanitronis DSM 18170 chromosome, complete genomeRadical SAM domain-containing protein7e-33140
NC_009436:1648159:1662033166203316631781146Enterobacter sp. 638, complete genomeradical SAM protein6e-32137
NC_020389:1936000:1943557194355719448761320Methanosarcina mazei Tuc01, complete genomeArylsulfatase regulatory protein7e-32137
NC_003552:3269000:3277504327750432788441341Methanosarcina acetivorans C2A, complete genomearylsulfatase regulator2e-30132
NC_008322:641197:6590426590426603491308Shewanella sp. MR-7, complete genomeRadical SAM domain protein1e-29129
NC_014364:3238374:3252286325228632535541269Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeRadical SAM domain protein4e-29128
NC_015663:770485:7888507888507901451296Enterobacter aerogenes KCTC 2190 chromosome, complete genomeRadical SAM domain-containing protein5e-28124
NC_015424:2316228:2320639232063923219521314Aeromonas veronii B565 chromosome, complete genomeArylsulfatase regulator3e-26118
NC_014364:667841:6754996754996766831185Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeRadical SAM domain protein2e-23108
NC_010067:4418000:4418174441817444193581185Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1893.2
NC_011147:3789696:378969637896963790226531Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-1169.3
NC_006511:3794017:379401737940173794547531Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-1169.3
NC_011083:4020000:402006640200664020596531Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,f1652e-1169.3
NC_016832:3798475:381662838166283817158531Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-1168.9
NC_003198:3824187:384234138423413842871531Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-1168.9
NC_004631:3809678:382783138278313828361531Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-1168.9
NC_006905:3942753:394551239455123946042531Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein3e-1168.6
NC_011205:4038884:403888440388844039414531Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-1168.6
NC_021182:4186515:4200167420016742013001134Clostridium pasteurianum BC1, complete genomeanaerobic sulfatase-maturating enzyme4e-1168.2
NC_011149:3930358:393035839303583930888531Salmonella enterica subsp. enterica serovar Agona str. SL483,f1656e-1167.8
NC_011094:3887648:388764838876483888178531Salmonella enterica subsp. enterica serovar Schwarzengrund strf1656e-1167.8
NC_011080:3976441:397644139764413976971531Salmonella enterica subsp. enterica serovar Newport str. SL254,f1655e-1167.8
NC_003197:4005857:400585740058574006387531Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein5e-1167.8
NC_011274:3799696:381784438178443818374531Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein5e-1167.8
NC_011294:3880500:388051438805143881044531Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein5e-1167.8
NC_016810:4027170:402717040271704027700531Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-1167.8
NC_016831:3779611:379867537986753799205531Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-1167.8
NC_016856:4019549:401954940195494020079531Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein5e-1167.8
NC_016857:4025767:402717140271714027701531Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein5e-1167.8
NC_016860:4110968:411096841109684111498531Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-1167.8
NC_016863:3967156:396715639671563967686531Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein5e-1167.8
NC_017046:4025998:402599840259984026528531Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein5e-1167.8
NC_008800:3061484:3073083307308330743931311Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative heme-binding protein2e-0962.8
NC_015224:1703130:1710824171082417121341311Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative heme-binding protein2e-0962.4
NC_006155:1807902:1815910181591018172201311Yersinia pseudotuberculosis IP 32953, complete genomeputative heme-binding protein3e-0962
NC_010634:1809500:1816119181611918174291311Yersinia pseudotuberculosis PB1/+, complete genomeradical SAM domain-containing protein3e-0962
NC_009708:2788855:2800213280021328015231311Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeradical SAM domain-containing protein3e-0962
NC_004088:2937077:2948433294843329497431311Yersinia pestis KIM, complete genomearylsulfatase activating enzyme6e-0960.8
NC_005810:1520000:1526795152679515281051311Yersinia pestis biovar Microtus str. 91001, complete genomeputative heme-binding protein6e-0960.8
NC_008150:905000:9117559117559130651311Yersinia pestis Antiqua, complete genomeputative heme-binding protein6e-0960.8
NC_003143:1691000:1697891169789116992011311Yersinia pestis CO92, complete genomeputative heme-binding protein6e-0960.8
NC_008149:2773139:2784495278449527858051311Yersinia pestis Nepal516, complete genomeheme-binding protein6e-0960.8
NC_010159:3169266:3172565317256531738751311Yersinia pestis Angola, complete genomeradical SAM domain protein6e-0960.8
NC_009381:1655731:1667087166708716683971311Yersinia pestis Pestoides F chromosome, complete genomeheme-binding protein6e-0960.8
NC_014029:1760948:1772396177239617737061311Yersinia pestis Z176003 chromosome, complete genomeputative heme-binding protein6e-0960.8
NC_017154:1707500:1714489171448917157991311Yersinia pestis D106004 chromosome, complete genomeputative heme-binding protein6e-0960.8
NC_017160:2054289:2065645206564520669551311Yersinia pestis D182038 chromosome, complete genomeputative heme-binding protein6e-0960.8
NC_017168:3948514:3959870395987039611801311Yersinia pestis A1122 chromosome, complete genomeputative heme-binding protein6e-0960.8
NC_017265:2557476:2568832256883225701421311Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative heme-binding protein6e-0960.8
NC_010465:2820500:2830661283066128319711311Yersinia pseudotuberculosis YPIII, complete genomeRadical SAM domain protein2e-0859.3
NC_007681:696252:7141157141157152871173Methanosphaera stadtmanae DSM 3091, complete genomepredicted arylsulfatase regulatory protein1e-0756.2
NC_009464:3135468:3140697314069731418481152Uncultured methanogenic archaeon RC-I, complete genomearylsulfatase regulator3e-0652