Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:2786283 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
27862832787245963cytochrome c nitrite reductase NrfD subunitQuickGO ontologyBLASTP
27872422787913672cytochrome c nitrite reductase Fe-S proteinQuickGO ontologyBLASTP
27879102788479570cytochrome c nitrite reductase pentaheme subunitQuickGO ontologyBLASTP
278852827899611434formate-dependent cytochrome c nitrite reductase c552 subunitQuickGO ontologyBLASTP
279054727917131167glycoside hydrolase family 13 domain proteinQuickGO ontologyBLASTP
279191127936051695sulfataseQuickGO ontologyBLASTP
2793742279383493hypothetical protein
279410227953251224Radical SAM domain proteinQuickGO ontologyBLASTP
279541627970531638porin LamB typeQuickGO ontologyBLASTP
279732827987341407glycoside hydrolase family 1QuickGO ontologyBLASTP
279877028006711902PTS system beta-glucoside-specific IIABC subunitQuickGO ontologyBLASTP
28011122801975864transcriptional antiterminator BglGQuickGO ontologyBLASTP
280262028040321413pyruvate kinaseQuickGO ontologyBLASTP
28043462804582237LPP repeat-containing proteinQuickGO ontologyBLASTP
28045392804691153hypothetical protein
280476428057861023ErfKYbiSYcfSYnhG family proteinQuickGO ontologyBLASTP