Pre_GI: BLASTN Hits

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Query: NC_013941:1857724 Escherichia coli O55:H7 str. CB9615 chromosome, complete genome

Start: 1857724, End: 1881225, Length: 23502

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The E. coli O55:H7 strain CB9615 was isolated from an infant with diarrhea in Germany in 2003 and confirmed to belong to the same sequence type (ST11) as the O157:H7 clone by multilocus sequence typing. The O55:H7 and O157:H7 E. coli clones have been shown to be closely related. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002655:20150002015000203595420955Escherichia coli O157:H7 EDL933, complete genome039650BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome033200BLASTN svgBLASTP svg
NC_011750:18099431809943183281122869Escherichia coli IAI39 chromosome, complete genome030990BLASTN svgBLASTP svg
NC_010498:17004471700447171902918583Escherichia coli SMS-3-5, complete genome029380BLASTN svgBLASTP svg
NC_011751:17141311714131174129427164Escherichia coli UMN026 chromosome, complete genome017810BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome015800BLASTN svgBLASTP svg
AC_000091:15219761521976154430422329Escherichia coli W3110 DNA, complete genome015490BLASTN svgBLASTP svg
NC_000913:15170511517051154061423564Escherichia coli K12, complete genome015490BLASTN svgBLASTP svg
NC_010473:16076461607646163120923564Escherichia coli str. K-12 substr. DH10B, complete genome015490BLASTN svgBLASTP svg
NC_004741:18230001823000184104318044Shigella flexneri 2a str. 2457T, complete genome014950BLASTN svgBLASTP svg
NC_004431:17131411713141173884125701Escherichia coli CFT073, complete genome012790BLASTN svgBLASTP svg
NC_008563:15778791577879160172323845Escherichia coli APEC O1, complete genome012400BLASTN svgBLASTP svg
NC_007946:15866561586656161278726132Escherichia coli UTI89, complete genome012380BLASTN svgBLASTP svg
NC_008258:17846371784637180559020954Shigella flexneri 5 str. 8401, complete genome011470BLASTN svgBLASTP svg
NC_004337:17836451783645180635922715Shigella flexneri 2a str. 301, complete genome011440BLASTN svgBLASTP svg
NC_010468:2406387*2406387242509318707Escherichia coli ATCC 8739, complete genome05965BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome05418BLASTN svgBLASTP svg
NC_011740:14947961494796152042525630Escherichia fergusonii ATCC 35469, complete genome02446BLASTN svgBLASTP svg
NC_020063:22300002230000227048640487Enterobacteriaceae bacterium strain FGI 57, complete genome0650BLASTN svgBLASTP svg
NC_014562:2563466*2563466261248449019Pantoea vagans C9-1 chromosome, complete genome1e-125458BLASTN svgBLASTP svg
NC_015968:21101752110175212892318749Enterobacter asburiae LF7a chromosome, complete genome5e-119436BLASTN svgBLASTP svg
NC_014500:1862000*1862000191726855269Dickeya dadantii 3937 chromosome, complete genome2e-93351BLASTN svgBLASTP svg
NC_012917:17405421740542176692926388Pectobacterium carotovorum subsp. carotovorum PC1, complete genome5e-91343BLASTN svgBLASTP svg
NC_012912:29985112998511302450925999Dickeya zeae Ech1591, complete genome1e-85325BLASTN svgBLASTP svg
NC_012912:2901021*2901021292518824168Dickeya zeae Ech1591, complete genome2e-84321BLASTN svgBLASTP svg
NC_015968:2583721*2583721261035326633Enterobacter asburiae LF7a chromosome, complete genome1e-76295BLASTN svgBLASTP svg
NC_014500:26880952688095271328625192Dickeya dadantii 3937 chromosome, complete genome1e-76295BLASTN svgBLASTP svg
NC_013592:20591382059138209167632539Dickeya dadantii Ech586, complete genome9e-65256BLASTN svgBLASTP svg
NC_010067:35381693538169356689828730Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-62248BLASTN svgBLASTP svg
NC_014532:21464662146466216923222767Halomonas elongata DSM 2581, complete genome7e-44186BLASTN svgBLASTP svg
NC_008321:26497812649781268071830938Shewanella sp. MR-4, complete genome3e-43184BLASTN svgBLASTP svg
NC_008322:27166762716676274827431599Shewanella sp. MR-7, complete genome7e-41176BLASTN svgBLASTP svg
NC_012880:2871480*2871480289700125522Dickeya dadantii Ech703, complete genome1e-39172BLASTN svgBLASTP svg
NC_002516:4321000*4321000434209921100Pseudomonas aeruginosa PAO1, complete genome2e-38168BLASTN svgBLASTP svg
NC_015061:31112113111211313800526795Rahnella sp. Y9602 chromosome, complete genome1e-33153BLASTN svgBLASTP svg
NC_013508:12623331262333128284320511Edwardsiella tarda EIB202, complete genome4e-33151BLASTN svgBLASTP svg
NC_002947:43622714362271438752425254Pseudomonas putida KT2440, complete genome6e-32147BLASTN svgBLASTP svg
NC_016002:2825017*2825017284854323527Pseudogulbenkiania sp. NH8B, complete genome9e-31143BLASTN svgBLASTP svg
NC_014562:16982531698253172164923397Pantoea vagans C9-1 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome9e-25123BLASTN svgBLASTP svg
NC_012214:2805297*2805297283239127095Erwinia pyrifoliae Ep1/96, complete genome3e-24121BLASTN svgBLASTP svg
NC_013166:14097901409790143362423835Kangiella koreensis DSM 16069, complete genome1e-23119BLASTN svgBLASTP svg
NC_007005:1738500*1738500176475226253Pseudomonas syringae pv. syringae B728a, complete genome8e-22113BLASTN svgBLASTP svg
NC_012559:76893976893979733928401Laribacter hongkongensis HLHK9, complete genome5e-20107BLASTN svgBLASTP svg
NC_013508:275081*27508130064325563Edwardsiella tarda EIB202, complete genome2e-19105BLASTN svgBLASTP svg
NC_004347:10396710396712630222336Shewanella oneidensis MR-1, complete genome8e-19103BLASTN svgBLASTP svg
NC_012779:261438*26143828632424887Edwardsiella ictaluri 93-146, complete genome8e-1693.7BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome8e-1693.7BLASTN svgBLASTP svg
CU928145:82436782436784378119415Escherichia coli 55989 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_004431:14016811401681142114919469Escherichia coli CFT073, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_007946:1239278*1239278125938320106Escherichia coli UTI89, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_008563:1175035*1175035119859923565Escherichia coli APEC O1, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_011748:82436782436784378119415Escherichia coli 55989, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_011751:643976*64397666569121716Escherichia coli UMN026 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-1179.8BLASTN svgBLASTP svg
AC_000091:2027648*2027648207009942452Escherichia coli W3110 DNA, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_000913:2028472*2028472205003821567Escherichia coli K12, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008228:81600081600083918923190Pseudoalteromonas atlantica T6c, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010473:2119480*2119480215635336874Escherichia coli str. K-12 substr. DH10B, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_004578:44329834432983445709924117Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004631:948054*94805498991041857Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1075.8BLASTN svgBLASTP svg
NC_007384:307013*30701333111524103Shigella sonnei Ss046, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010498:301000*30100034338442385Escherichia coli SMS-3-5, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1075.8BLASTN svgBLASTP svg
NC_014118:2316000*2316000234104325044Burkholderia sp. CCGE1002 chromosome chromosome 2, complete7e-1073.8BLASTN svgBLASTP svg
CU928160:2091249*2091249211444123193Escherichia coli IAI1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002655:27306592730659276187131213Escherichia coli O157:H7 EDL933, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002695:26554452655445267786922425Escherichia coli O157:H7 str. Sakai, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015062:58826588268328124456Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_015566:3659318*3659318367796918652Serratia sp. AS12 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_020063:2449554*2449554247289823345Enterobacteriaceae bacterium strain FGI 57, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_004337:36219853621985364626824284Shigella flexneri 2a str. 301, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005966:159232*15923218289723666Acinetobacter sp. ADP1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008563:15054051505405154006134657Escherichia coli APEC O1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013716:1756545*1756545177694320399Citrobacter rodentium ICC168, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015663:4906652*4906652493024623595Enterobacter aerogenes KCTC 2190 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015856:940625*94062598805147427Collimonas fungivorans Ter331 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
AC_000091:43131674313167433668223516Escherichia coli W3110 DNA, complete genome2e-0765.9BLASTN svgBLASTP svg
CP002516:44312354431235445210920875Escherichia coli KO11, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_000913:43074714307471432826120791Escherichia coli K12, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002655:51948045194804521379718994Escherichia coli O157:H7 EDL933, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002695:51648195164819518468719869Escherichia coli O157:H7 str. Sakai, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008027:55850755850758141922913Pseudomonas entomophila L48, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008563:46560004656000467809922100Escherichia coli APEC O1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010473:44094924409492443038920898Escherichia coli str. K-12 substr. DH10B, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014210:5270643*5270643529559924957Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-0765.9BLASTN svgBLASTP svg
NC_007384:45300004530000455031620317Shigella sonnei Ss046, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_004431:48676484867648489054022893Escherichia coli CFT073, complete genome7e-0763.9BLASTN svgBLASTP svg
CU928160:43951564395156441536720212Escherichia coli IAI1 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
CP002185:45661504566150459009923950Escherichia coli W, complete genome7e-0763.9BLASTN svgBLASTP svg
AP010958:50221965022196504082118626Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007613:41568414156841418149124651Shigella boydii Sb227, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007946:3855445*3855445387497119527Escherichia coli UTI89, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020064:1409596*1409596145680247207Serratia marcescens FGI94, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010468:43051054305105432709121987Escherichia coli ATCC 8739, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009801:46430004643000466340420405Escherichia coli E24377A, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009800:43322294332229435609923871Escherichia coli HS, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008563:3888232*3888232390776619535Escherichia coli APEC O1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008253:45419154541915456410622192Escherichia coli 536, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007946:25874725874728282624080Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008253:25705925705928215125093Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008563:258725*25872528280524081Escherichia coli APEC O1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009800:20493462049346207518725842Escherichia coli HS, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011751:25683025683028052023691Escherichia coli UMN026 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015850:19470001947000199559948600Acidithiobacillus caldus SM-1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome3e-0661.9BLASTN svgBLASTP svg