Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:1740542 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
174054217420861545extracellular solute-binding protein family 5QuickGO ontologyBLASTP
17421941743114921binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
17431241744029906binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
174408417457811698Malate dehydrogenase oxaloacetate-decarboxylatingQuickGO ontologyBLASTP
17459911746881891cytidine deaminaseQuickGO ontologyBLASTP
174711917484381320hypothetical proteinBLASTP
17484741749169696LrgB family proteinQuickGO ontologyBLASTP
17491691749576408LrgA family proteinQuickGO ontologyBLASTP
174977117509551185major facilitator superfamily MFS_1QuickGO ontologyBLASTP
175096417523521389hypothetical protein
175236317537811419hypothetical protein
17545851755379795CellulaseQuickGO ontologyBLASTP
175565617569601305adenosylmethionine-8-amino-7-oxononanoate aminotransferaseQuickGO ontologyBLASTP
175705617580931038biotin synthaseQuickGO ontologyBLASTP
1758133175929011588-amino-7-oxononanoate synthaseQuickGO ontologyBLASTP
17592711760032762biotin biosynthesis protein BioCQuickGO ontologyBLASTP
17600251760705681dethiobiotin synthaseQuickGO ontologyBLASTP
176158317635952013excinuclease ABC B subunitQuickGO ontologyBLASTP
17636241764055432hypothetical proteinBLASTP
17640311764963933hypothetical proteinBLASTP
176535417663761023molybdenum cofactor biosynthesis protein AQuickGO ontologyBLASTP
17664111766929519molybdenum cofactor biosynthesis protein BQuickGO ontologyBLASTP