Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:816000 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
8160098186092601penicillin-binding protein 1A familyQuickGO ontologyBLASTP
8187998204931695Malate dehydrogenase oxaloacetate decarboxylating NADPQuickGO ontologyBLASTP
8211628230211860phage integraseQuickGO ontologyBLASTP
8232478243231077Type II site-specific deoxyribonucleaseQuickGO ontologyBLASTP
8243488254661119DNA-cytosine methyltransferaseQuickGO ontologyBLASTP
826174826650477hypothetical proteinBLASTP
8266688286742007AAA ATPase central regionQuickGO ontologyBLASTP
828671829588918phage integraseQuickGO ontologyBLASTP
829739830452714hypothetical protein
8307258335142790UvrDREP helicaseQuickGO ontologyBLASTP
8337838351681386hypothetical proteinBLASTP
835155835778624hypothetical proteinBLASTP
8362148374041191PASPAC sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
837355837951597transcriptional regulator TetR familyQuickGO ontologyBLASTP
8380958391891095Zn-dependent hydrolase of the beta-lactamase foldQuickGO ontologyBLASTP