Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:2049346 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
20493462050266921carboxylateamino acidamine transporterQuickGO ontologyBLASTP
20502552050725471very short patch repair proteinQuickGO ontologyBLASTP
205070620521241419DNA-cytosine methyltransferaseQuickGO ontologyBLASTP
20521912052871681putative metal-dependent phosphohydrolaseQuickGO ontologyBLASTP
20528982053176279ISEhe3 transposase orfAQuickGO ontologyBLASTP
20532332054045813ISEhe3 transposase orfBQuickGO ontologyBLASTP
20541412054344204outer membrane protein truncationQuickGO ontologyBLASTP
20549352055786852chaperone protein HchAQuickGO ontologyBLASTP
205589420572521359heavy metal sensor histidine kinaseQuickGO ontologyBLASTP
20572522058034783heavy metal response regulatorQuickGO ontologyBLASTP
20580562058469414transthyretin family proteinQuickGO ontologyBLASTP
205857820595821005oxidoreductase molybdopterin bindingQuickGO ontologyBLASTP
20595832060218636hypothetical proteinBLASTP
20604752061125651metal-binding proteinQuickGO ontologyBLASTP
20614682061998531nickel-dependent hydrogenase b-type cytochrome subunitQuickGO ontologyBLASTP
20629002063292393hypothetical proteinBLASTP
20633022063505204hypothetical proteinBLASTP
20645032064604102hypothetical protein
20648122065612801hypothetical protein
206562220676161995hypothetical proteinBLASTP
206798120690721092putative acyltransferaseQuickGO ontologyBLASTP
20690512069836786hypothetical proteinBLASTP
20698632070537675hypothetical proteinBLASTP
207053420716821149putative baseplate J proteinQuickGO ontologyBLASTP
20716722072121450phage protein GP46QuickGO ontologyBLASTP
20721182072699582bacteriophage Mu Gp45 proteinQuickGO ontologyBLASTP
207269620737811086bacteriophage Mu P proteinQuickGO ontologyBLASTP
20737782074164387hypothetical protein
20740882074597510hypothetical proteinBLASTP
20745972075187591hypothetical protein