Pre_GI: BLASTP Hits

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Query: NC_004605:1385444:1413731 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 1413731, End: 1414462, Length: 732

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:8283701:828481182848118285476666Bradyrhizobium japonicum USDA 6, complete genomeRhcR protein9e-1684
NC_012660:819381:820391820391821044654Pseudomonas fluorescens SBW25 chromosome, complete genometype III secretion system protein7e-1374.3
NC_002678:5139557:516041951604195161084666Mesorhizobium loti MAFF303099, complete genometranslocation protein in type III secretion system, hrcR8e-1373.9
NC_009800:2995958:302168430216843022349666Escherichia coli HS, complete genometype III secretion apparatus protein EpaP1e-1273.9
NC_015714:768500:780767780767781582816Treponema paraluiscuniculi Cuniculi A chromosome, complete genomeIIISP family Type III (virulence-related) secretory pathway protein2e-1272.8
NC_010520:2860960:286310428631042863880777Clostridium botulinum A3 str. Loch Maree, complete genomeflagellar biosynthetic protein FliP2e-1272.8
NC_000919:773784:785885785885786700816Treponema pallidum subsp. pallidum str. Nichols, complete genomeflagellar biosynthesis protein2e-1272.4
NC_010741:775000:787333787333788148816Treponema pallidum subsp. pallidum SS14, complete genomeflagellar biosynthetic protein2e-1272.4
NC_016842:775368:787469787469788284816Treponema pallidum subsp. pertenue str. SamoaD chromosome, completeIIISP family Type III (virulence-related) secretory pathway protein2e-1272.4
NC_016843:775371:787656787656788471816Treponema pallidum subsp. pertenue str. Gauthier chromosome,IIISP family Type III (virulence-related) secretory pathway protein2e-1272.4
NC_016844:775334:787823787823788638816Treponema pallidum subsp. pallidum DAL-1 chromosome, completeIIISP family Type III (virulence-related) secretory pathway protein2e-1272.4
NC_016848:775822:787923787923788738816Treponema pallidum subsp. pertenue str. CDC2 chromosome, completeIIISP family Type III (virulence-related) secretory pathway protein2e-1272.4
NC_017268:775000:787135787135787950816Treponema pallidum subsp. pallidum str. Chicago chromosome,flagellar biosynthetic protein FliP2e-1272.4
NC_021508:775264:787365787365788180816Treponema pallidum subsp. pallidum SS14, complete genomeIIISP family Type III (virulence-related) secretory pathway protein2e-1272.4
NC_007645:3343815:335914833591483359795648Hahella chejuensis KCTC 2396, complete genomeType III secretory pathway, component EscR4e-1272
CU928145:3196173:321954732195473220212666Escherichia coli 55989 chromosome, complete genomeputative type III secretion system protein EpaP4e-1272
NC_011748:3196173:321954732195473220212666Escherichia coli 55989, complete genomesurface presentation of antigens protein SpaP4e-1272
NC_009697:2714668:271466827146682715444777Clostridium botulinum A str. ATCC 19397 chromosome, completeflagellar biosynthesis protein FliP3e-1272
NC_009698:2649453:265159726515972652373777Clostridium botulinum A str. Hall chromosome, complete genomeflagellar biosynthesis protein FliP3e-1272
NC_001318:270488:288182288182288946765Borrelia burgdorferi B31, complete genomeflagellar biosynthesis protein3e-1272
NC_011728:269853:287550287550288314765Borrelia burgdorferi ZS7, complete genomeflagellar biosynthesis protein FliP3e-1272
NC_002695:3702344:372500537250053725670666Escherichia coli O157:H7 str. Sakai, complete genomeEpaP3e-1272
NC_002655:3769643:379231037923103792975666Escherichia coli O157:H7 EDL933, complete genomeputative integral membrane protein-component of typeIII secretion apparatus3e-1272
NC_011353:3805819:382940238294023830067666Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesurface presentation of antigens protein SpaP3e-1272
NC_013008:3761467:378412837841283784793666Escherichia coli O157:H7 str. TW14359 chromosome, complete genomesurface presentation of antigens protein SpaP3e-1272
NC_005126:4423964:443824844382484438901654Photorhabdus luminescens subsp. laumondii TTO1, complete genomeType III secretion component protein SctR4e-1271.6
NC_010468:906957:916676916676917341666Escherichia coli ATCC 8739, complete genomeYop virulence translocation R6e-1271.2
NC_015921:272517:286747286747287511765Borrelia bissettii DN127 chromosome, complete genomeflagellar biosynthetic protein FliP8e-1270.9
NC_012962:1189021:119562011956201196273654Photorhabdus asymbiotica, complete genometype iii secretion component protein sctr8e-1270.9
NC_008277:272741:287073287073287837765Borrelia afzelii PKo, complete genomeflagellar biosynthesis protein1e-1170.5
NC_008710:277207:290194290194290964771Borrelia turicatae 91E135, complete genomeflagellar biosynthetic protein FliP2e-1169.7
AP010958:3669500:370724537072453707898654Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS structure protein EscR2e-1169.7
NC_013353:3669500:370724537072453707898654Escherichia coli O103:H2 str. 12009, complete genomeT3SS structure protein EscR2e-1169.7
NC_013361:5319497:533598353359835336636654Escherichia coli O26:H11 str. 11368 chromosome, complete genometype III secretion system protein2e-1169.7
NC_002655:4653160:468631546863154686968654Escherichia coli O157:H7 EDL933, complete genomeescR2e-1169.7
NC_011353:4688000:472043647204364721089654Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion system protein2e-1169.7
NC_011601:4096427:413109841310984131751654Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometype III secretion system protein2e-1169.7
NC_013008:4643825:467647746764774677130654Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype III secretion system protein2e-1169.7
NC_013364:3701895:374873937487393749392654Escherichia coli O111:H- str. 11128, complete genomeT3SS structure protein EscR2e-1169.7
NC_013941:4470932:450483645048364505489654Escherichia coli O55:H7 str. CB9615 chromosome, complete genometype III secretion system EscR protein2e-1169.7
NC_008593:1103293:112174711217471122520774Clostridium novyi NT, complete genomeflagellar biosynthetic protein fliP2e-1169.7
CU928160:3030324:305366230536623054327666Escherichia coli IAI1 chromosome, complete genomeputative type III secretion system protein EpaP2e-1169.3
NC_011751:3285646:330923233092323309897666Escherichia coli UMN026 chromosome, complete genomesurface presentation of antigens protein SpaP2e-1169.3
CP002185:3167738:319245531924553193120666Escherichia coli W, complete genometype III secretion system protein2e-1169.3
CP002516:903241:912956912956913621666Escherichia coli KO11, complete genomeYop virulence translocation R2e-1169.3
NC_006156:271410:286964286964287728765Borrelia garinii PBi chromosome linear, complete sequenceflagellar biosynthesis protein2e-1169.3
NC_010694:2971170:299189229918922992563672Erwinia tasmaniensis, complete genomeType III secretion apparatus2e-1169.3
AP010958:3474077:349741334974133498078666Escherichia coli O103:H2 str. 12009 DNA, complete genometype III secretion protein EpaP2e-1169.3
NC_011415:3217796:324113232411323241797666Escherichia coli SE11 chromosome, complete genomesurface presentation of antigens protein SpaP2e-1169.3
NC_017238:272980:287312287312288076765Borrelia afzelii PKo chromosome, complete genomeflagellar biosynthetic protein FliP2e-1169.3
NC_016902:903241:912956912956913621666Escherichia coli KO11FL chromosome, complete genomeYop virulence translocation R2e-1169.3
NC_013364:3552284:357562635756263576291666Escherichia coli O111:H- str. 11128, complete genometype III secretion protein EpaP2e-1169.3
NC_013361:3867558:389089538908953891560666Escherichia coli O26:H11 str. 11368 chromosome, complete genomesurface presentation of antigens protein SpaP2e-1169.3
NC_013353:3474077:349741334974133498078666Escherichia coli O103:H2 str. 12009, complete genometype III secretion protein EpaP2e-1169.3
NC_011741:3030324:305366230536623054327666Escherichia coli IAI1 chromosome, complete genomesurface presentation of antigens protein SpaP2e-1169.3
NC_013971:1660144:168515316851531685824672Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein3e-1168.9
NC_013961:1622616:164760716476071648296690Erwinia amylovora, complete genomeSurface presentation of antigens protein SpaP3e-1168.9
NC_002695:4584177:461733246173324617985654Escherichia coli O157:H7 str. Sakai, complete genomeEscR4e-1168.6
NC_018664:1663324:166941316694131670174762Clostridium acidurici 9a chromosome, complete genomeflagellar biosynthesis protein FliP4e-1168.6
NC_010694:2138000:215542821554282156099672Erwinia tasmaniensis, complete genomeType III secretion apparatus5e-1168.2
NC_011147:2814664:284374328437432844417675Salmonella enterica subsp. enterica serovar Paratyphi A strsurface presentation of antigens protein SpaP6e-1167.8
NC_006511:2819128:284820728482072848881675Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCsecretory protein (associated with virulence)6e-1167.8
NC_012214:2221702:224283022428302243501672Erwinia pyrifoliae Ep1/96, complete genometype III secretion apparatus7e-1167.8
NC_014366:1814000:183381318338131834574762Gamma proteobacterium HdN1, complete genomeFlagellar transport protein FliP1e-1067
NC_009801:3175714:319904831990483199713666Escherichia coli E24377A, complete genometype III secretion apparatus protein EpaP1e-1066.6
NC_012791:2423466:242400824240082424988981Variovorax paradoxus S110 chromosome 1, complete genomeflagellar biosynthetic protein FliP1e-1066.6
NC_021184:2238500:225835422583542259112759Desulfotomaculum gibsoniae DSM 7213, complete genomeflagellar biosynthetic protein FliP2e-1066.2
NC_003198:2856596:288567128856712886345675Salmonella enterica subsp. enterica serovar Typhi str. CT18,secretory protein (associated with virulence)3e-1065.9
NC_004631:2872192:287152828715282872202675Salmonella enterica subsp. enterica serovar Typhi Ty2, completevirulence-associated secretory protein3e-1065.9
NC_016832:2859491:285882728588272859501675Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Surface presentation of antigens protein spaP3e-1065.9
NC_016893:43234:573005730058109810Wigglesworthia glossinidia endosymbiont of Glossina morsitansflagellar biosynthesis protein3e-1065.9
NC_011274:2909799:290913529091352909809675Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91surface presentation of antigens protein SpaP4e-1065.5
NC_011205:3078732:307806830780683078742675Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853surface presentation of antigens protein SpaP4e-1065.5
NC_011094:2913500:294086729408672941541675Salmonella enterica subsp. enterica serovar Schwarzengrund strsurface presentation of antigens protein SpaP4e-1065.5
NC_003197:3005842:303367130336713034345675Salmonella typhimurium LT2, complete genomeneedle complex export protein4e-1065.5
NC_006905:2987863:298719929871992987873675Salmonella enterica subsp. enterica serovar Choleraesuis strsurface presentation of antigens; secretory proteins4e-1065.5
NC_011080:2982346:301017530101753010849675Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus protein, YscR/HrcR family4e-1065.5
NC_011149:2912219:294219729421972942871675Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus protein, YscR/HrcR family4e-1065.5
NC_010102:2967464:299665329966532997327675Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-1065.5
NC_012125:2938519:296758229675822968256675Salmonella enterica subsp. enterica serovar Paratyphi C strainsurface presentation of antigens protein SpaP4e-1065.5
NC_016810:3028421:305624730562473056921675Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system secretory apparatus4e-1065.5
NC_009012:574145:594275594275595057783Clostridium thermocellum ATCC 27405, complete genomeflagellar biosynthetic protein FliP3e-1065.5
NC_014366:2513352:251610325161032516768666Gamma proteobacterium HdN1, complete genomeType III secretory pathway protein3e-1065.5
NC_017046:3027161:305498730549873055661675Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system secretory apparatus4e-1065.5
NC_016863:2974333:300216130021613002835675Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1surface presentation of antigens protein SpaP4e-1065.5
NC_016860:3029272:305710130571013057775675Salmonella enterica subsp. enterica serovar Typhimurium strsurface presentation of antigens protein SpaP4e-1065.5
NC_016857:3028421:305624730562473056921675Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74surface presentation of antigens protein SpaP4e-1065.5
NC_016856:3026426:305390830539083054582675Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssurface presentation of antigens protein SpaP4e-1065.5
NC_016831:2867766:289559528955952896269675Salmonella enterica subsp. enterica serovar Gallinarum/pullorumsecretory protein (associated with virulence)4e-1065.5
NC_015391:2059191:207744320774432078207765Carnobacterium sp. 17-4 chromosome, complete genomeflagellar biosynthesis protein FliP7e-1064.3
NC_014328:1135854:114297111429711143771801Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeflagellar biosynthesis protein FliP7e-1064.3
NC_010723:833870:849794849794850573780Clostridium botulinum E3 str. Alaska E43, complete genomeflagellar biosynthetic protein FliP1e-0963.9
NC_006511:1506915:151290715129071513554648Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative type III secretion protein1e-0963.9
NC_003197:1471349:149874414987441499391648Salmonella typhimurium LT2, complete genomeneedle complex export protein1e-0963.9
NC_010102:1616530:162252216225221623169648Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0963.9
NC_011094:1435347:146264814626481463295648Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion system protein1e-0963.9
NC_011147:1502096:150808815080881508735648Salmonella enterica subsp. enterica serovar Paratyphi A strtype III secretion system protein1e-0963.9
NC_011205:1852665:185865718586571859304648Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion system protein1e-0963.9
NC_012125:2360815:236680723668072367454648Salmonella enterica subsp. enterica serovar Paratyphi C straintype III secretion system protein1e-0963.9
NC_016856:1481325:150872015087201509367648Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stype III secretion system protein1e-0963.9
NC_016860:1469066:149643114964311497078648Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system protein1e-0963.9
NC_016863:1429516:145691114569111457558648Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1type III secretion system protein1e-0963.9
NC_011149:1710601:171659317165931717240648Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus protein, YscR/HrcR family9e-1063.9
NC_011080:1470794:149818414981841498831648Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus protein, YscR/HrcR family9e-1063.9
NC_011274:1763676:176966817696681770315648Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type III secretion system protein9e-1063.9
NC_011294:1723852:172984417298441730491648Salmonella enterica subsp. enterica serovar Enteritidis strtype III secretion system protein9e-1063.9
NC_016831:1236786:126411712641171264764648Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative type III secretion protein9e-1063.9
NC_010067:1507823:151739715173971518044648Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-1063.9
NC_020291:4903981:492684349268434927622780Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeflagellar biosynthetic protein FliP1e-0963.5
NC_013722:1689125:172403317240331724728696Xanthomonas albilineans, complete genomeprobable xanthomonas secretion apparatus protein1e-0963.5
NC_003198:1621347:162733916273391627986648Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative type III secretion protein1e-0963.5
NC_013971:2876733:289802728980272898698672Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein2e-0962.8
NC_013961:851044:872602872602873273672Erwinia amylovora, complete genomeSurface presentation of antigens protein SpaP2e-0962.8
NC_015376:345347:362067362067362717651Burkholderia gladioli BSR3 chromosome chromosome 2, completeType III secretion inner membrane protein SctR2e-0962.8
NC_020126:8080574:808990080899008090616717Myxococcus stipitatus DSM 14675, complete genometype III secretion system protein3e-0962.4
NC_003919:457482:473214473214473858645Xanthomonas axonopodis pv. citri str. 306, complete genomeHrcR protein3e-0962.4
NC_003902:1416000:143289414328941433538645Xanthomonas campestris pv. campestris str. ATCC 33913, completetype III secretion system protein3e-0962.4
NC_020911:2921925:294310029431002943876777Octadecabacter antarcticus 307, complete genomeflagellar biosynthetic protein FliP3e-0962.4
NC_010674:858397:871487871487872266780Clostridium botulinum B str. Eklund 17B, complete genomeflagellar biosynthetic protein FliP3e-0962
NC_004344:26828:560945609456885792Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein3e-0962
NC_014758:1387470:138747013874701388204735Calditerrivibrio nitroreducens DSM 19672 chromosome, completeflagellar biosynthetic protein flip4e-0961.6
NC_014652:628435:649907649907650668762Caldicellulosiruptor hydrothermalis 108 chromosome, completeflagellar biosynthetic protein flip5e-0961.6
NC_013223:685628:706544706544707302759Desulfohalobium retbaense DSM 5692, complete genomeflagellar biosynthetic protein FliP5e-0961.2
NC_021182:2883716:289853128985312899304774Clostridium pasteurianum BC1, complete genomeflagellar biosynthetic protein FliP6e-0961.2
NC_012225:377441:379944379944380717774Brachyspira hyodysenteriae WA1, complete genomeflagellar biosynthesis protein FliP1e-0860.5
NC_009253:2615777:261790226179022618675774Desulfotomaculum reducens MI-1 chromosome, complete genomeflagellar biosynthesis protein FliP1e-0860.5
NC_016894:2931213:293629929362992937051753Acetobacterium woodii DSM 1030 chromosome, complete genomeflagellar biosynthesis protein FliP2e-0859.7
NC_009617:4911595:491593049159304916709780Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeflagellar biosynthetic protein FliP2e-0859.7
NC_004129:1848701:185275818527581853483726Pseudomonas fluorescens Pf-5, complete genomeflagellar biosynthesis protein2e-0859.3
NC_012880:1765920:183138618313861832150765Dickeya dadantii Ech703, complete genomeflagellar biosynthetic protein FliP2e-0859.3
NC_009512:1691930:169584916958491696604756Pseudomonas putida F1, complete genomeflagellar biosynthetic protein FliP2e-0859.3
NC_017986:4374979:437889843788984379653756Pseudomonas putida ND6 chromosome, complete genomeflagellar biosynthesis protein FliP2e-0859.3
NC_010501:4080937:409695540969554097722768Pseudomonas putida W619, complete genomeflagellar biosynthetic protein FliP3e-0858.9
NC_014150:233194:250666250666251454789Brachyspira murdochii DSM 12563 chromosome, complete genomeflagellar biosynthetic protein FliP3e-0858.9
NC_009654:3849774:387715638771563877893738Marinomonas sp. MWYL1, complete genomeflagellar biosynthesis protein FliP4e-0858.5
NC_002947:4931476:494765749476574948412756Pseudomonas putida KT2440, complete genomeflagellar biosynthesis protein3e-0858.5
NC_017243:1499757:150488415048841505657774Brachyspira intermedia PWS/A chromosome, complete genomeflagellar biosynthesis protein FliP5e-0858.2
NC_007492:1735595:173651217365121737270759Pseudomonas fluorescens PfO-1, complete genomeFlagellar transport protein FliP7e-0857.8
NC_020418:14965:285512855129210660Morganella morganii subsp. morganii KT, complete genomeType III secretion inner membrane protein7e-0857.8
NC_014330:2409559:241113624111362411936801Brachyspira pilosicoli 95/1000 chromosome, complete genomeflagellar biosynthesis protein FliP8e-0857.8
NC_014500:3023762:306092430609243061700777Dickeya dadantii 3937 chromosome, complete genomeflagellar biosynthesis protein fliP1e-0757.4
NC_011126:555483:588025588025588783759Hydrogenobaculum sp. Y04AAS1, complete genomeflagellar biosynthetic protein FliP1e-0757
NC_008209:253663:259899259899260636738Roseobacter denitrificans OCh 114, complete genomeflagellar biosynthetic protein FliP1e-0757
NC_009997:2699644:270113527011352701785651Shewanella baltica OS195, complete genomeYop virulence translocation R1e-0757
NC_007759:1356439:135736613573661358154789Syntrophus aciditrophicus SB, complete genomeflagellar biosynthetic protein1e-0757
NC_019908:852230:868245868245869027783Brachyspira pilosicoli P43/6/78 chromosome, complete genomeflagellar biosynthesis protein FliP1e-0757
NC_018604:1329228:132922813292281330010783Brachyspira pilosicoli WesB complete genomeflagellar biosynthesis protein FliP1e-0757
NC_009439:20545:437744377444427654Pseudomonas mendocina ymp, complete genometype III secretion system protein1e-0757
NC_012440:659646:665235665235665903669Persephonella marina EX-H1, complete genomeflagellar biosynthetic protein FliP2e-0756.2
NC_007645:4195500:422130042213004222031732Hahella chejuensis KCTC 2396, complete genomeflagellar biosynthetic protein FliP2e-0756.2
NC_018607:1134900:113490011349001135682783Brachyspira pilosicoli B2904 chromosome, complete genomeflagellar biosynthetic protein FliP3e-0755.8
NC_013892:2689645:268964526896452690454810Xenorhabdus bovienii SS-2004 chromosome, complete genomeflagellar biosynthesis protein4e-0755.1
NC_009664:533021:537734537734538597864Kineococcus radiotolerans SRS30216, complete genomeflagellar biosynthetic protein FliP8e-0754.3
NC_011772:1575674:159613715961371596895759Bacillus cereus G9842, complete genomeputative flagellar biosynthetic protein FliP1e-0653.9