Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:20545 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
20545227762232hypothetical protein
2297223322351hypothetical proteinBLASTP
2332523528204hypothetical protein
23528256182091YscCHrcC family type III secretion outer membrane proteinQuickGO ontologyBLASTP
2562026045426hypothetical protein
2603226256225hypothetical protein
2641727004588HrpEYscL family type III secretion apparatus proteinQuickGO ontologyBLASTP
2699427527534hypothetical proteinBLASTP
2752428342819YscJHrcJ family type III secretion apparatus lipoproteinQuickGO ontologyBLASTP
2835328721369YscIHrpB family type III secretion apparatus proteinQuickGO ontology
2876529664900HrpZ family proteinQuickGO ontology
2971630009294hypothetical protein
3030531210906sigma-54 dependent trancsriptional regulatorQuickGO ontologyBLASTP
3159432523930sigma-54 dependent trancsriptional regulatorQuickGO ontologyBLASTP
3288233268387hypothetical protein
33458350321575transposase IS66QuickGO ontologyBLASTP
3505235411360IS66 Orf2 family proteinQuickGO ontologyBLASTP
36171373281158TyeA family type III secretion effector delivery regulatorQuickGO ontology
37328394122085HrcV family type III secretion proteinQuickGO ontologyBLASTP
3942940343915YscDHrpQ family type III secretion apparatus proteinQuickGO ontology
40340416981359FliIYscN family ATPaseQuickGO ontologyBLASTP
4170142147447hypothetical protein
4213742673537hypothetical protein
4267043386717hypothetical proteinBLASTP
4337643777402surface presentation of antigens SPOA proteinQuickGO ontology
4377444427654type III secretion system proteinQuickGO ontologyBLASTP