Pre_GI Gene

Some Help

Host: NC_012660 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012660:819381 Pseudomonas fluorescens SBW25 chromosome, complete genome

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Isolated in 1989 from the leaf surface of a sugar beet plant grown at the University Farm, Wytham, Oxford, UK. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
818866819384519nodulation-related hypothetical proteinQuickGO ontology
8193818203941014putative type III secretion proteinQuickGO ontologyBLASTP
820391821044654type III secretion system proteinQuickGO ontologyBLASTP
821052821315264putative type III secretion membrane proteinQuickGO ontologyBLASTP
821326822114789putative type III secretion proteinQuickGO ontologyBLASTP
8221118232081098putative type III secretion proteinQuickGO ontologyBLASTP
823209823559351hypothetical proteinBLASTP
823571823774204putative type III secretion lipoproteinQuickGO ontologyBLASTP
8237718259122142putative type III secretion proteinQuickGO ontologyBLASTP
825927826319393hypothetical protein
826321826536216hypothetical protein
826643827218576putative type III secretion proteinQuickGO ontologyBLASTP
827218827799582putative type III secretion proteinQuickGO ontologyBLASTP
827789828604816putative type III secretion proteinQuickGO ontologyBLASTP
828589829062474putative type III secretion proteinQuickGO ontology
829441830358918putative type III secretion system regulatory proteinQuickGO ontologyBLASTP
8306608317601101GTP-dependent nucleic acid-binding protein EngDQuickGO ontologyBLASTP
831782832366585peptidyl-tRNA hydrolaseQuickGO ontologyBLASTP
83253583313760350S ribosomal protein L25general stress protein CtcQuickGO ontologyBLASTP
833275834216942ribose-phosphate pyrophosphokinaseQuickGO ontologyBLASTP
8343748352258524-diphosphocytidyl-2-C-methyl-D-erythritol kinaseQuickGO ontologyBLASTP
835227835844618outer membrane lipoprotein LolBQuickGO ontologyBLASTP
8358498375731725hypothetical proteinBLASTP
8377568390451290glutamyl-tRNA reductaseQuickGO ontologyBLASTP
8390428401241083peptide chain release factor 1QuickGO ontologyBLASTP
840125840955831protein methyltransferaseQuickGO ontologyBLASTP
840949841704756molybdopterin biosynthesis protein MoeBQuickGO ontologyBLASTP
841697842491795glutamate racemaseQuickGO ontologyBLASTP
842595843122528hypothetical proteinBLASTP