Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:2995958 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
299595829972201263diaminopimelate decarboxylaseQuickGO ontologyBLASTP
29973422998277936transcriptional activator protein LysRQuickGO ontologyBLASTP
29982642998956693aspartate racemase family proteinQuickGO ontologyBLASTP
299908530005031419arabinose-proton symporterQuickGO ontologyBLASTP
300081830015797622-deoxy-D-gluconate 3-dehydrogenaseQuickGO ontologyBLASTP
300160930024458374-deoxy-L-threo-5-hexosulose-uronate ketol-isomeraseQuickGO ontologyBLASTP
300273230039131182acetyl-CoA acetyltransferaseQuickGO ontologyBLASTP
300416830053971230serine transporter family proteinQuickGO ontologyBLASTP
30057973006489693hypothetical proteinBLASTP
30068233007632810transcriptional regulatory protein C terminalQuickGO ontologyBLASTP
30077143008106393hypothetical proteinBLASTP
30081393008279141hypothetical proteinBLASTP
30088203009056237hypothetical proteinBLASTP
30091103009556447hypothetical proteinBLASTP
30098233010314492tetratricopeptide repeat proteinQuickGO ontologyBLASTP
301064930120251377transcriptional regulatory protein C terminalQuickGO ontologyBLASTP
30130143013646633transcriptional regulator LuxR familyQuickGO ontologyBLASTP
30138653014296432hypothetical proteinBLASTP
30142993014493195hypothetical proteinBLASTP
30155853015860276IS1 transposase orfAQuickGO ontologyBLASTP
30157793016282504IS1 transposase orfBQuickGO ontologyBLASTP
30166163016948333type III secretion apparatus protein EprJQuickGO ontologyBLASTP
30169683017183216type III secretion apparatus needle proteinQuickGO ontologyBLASTP
301722130184021182type III secretion apparatus protein EprHQuickGO ontologyBLASTP
30186603019160501transcriptional regulator LuxR familyQuickGO ontologyBLASTP
30191623019437276putative invasion lipoproteinQuickGO ontologyBLASTP
30195173019879363hypothetical proteinBLASTP
30206453021412768type III secretion apparatus protein EpaRQuickGO ontologyBLASTP
30214143021674261type III secretion apparatus protein EpaQQuickGO ontologyBLASTP
30216843022349666type III secretion apparatus protein EpaPQuickGO ontologyBLASTP
30223393023286948type III secretion apparatus protein EpaOQuickGO ontologyBLASTP
3023286302338499type III secretion apparatus protein truncationQuickGO ontologyBLASTP