Pre_GI Gene

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Host: NC_011094 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011094:1435347 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
143534714370951749sensor-kinaseQuickGO ontologyBLASTP
14370521437690639response regulatorQuickGO ontologyBLASTP
14377881438000213hypothetical proteinBLASTP
14380961439055960pathogenicity island proteinQuickGO ontologyBLASTP
14392271439955729transcriptional regulator MerR family proteinQuickGO ontologyBLASTP
14401341440772639EsrBQuickGO ontologyBLASTP
144080314435652763secretion system regulatorSensor componentQuickGO ontologyBLASTP
144436914458621494type III secretion outer membrane pore YscCHrcC family proteinQuickGO ontologyBLASTP
144585514470541200type III secretion apparatus protein YscDHrpQ family proteinQuickGO ontologyBLASTP
14470621447304243type III secretion system protein YseE family proteinQuickGO ontologyBLASTP
14478391448429591secretion system effector protein SseBQuickGO ontologyBLASTP
14483841448899516type III secretion low calcium response chaperone LcrHSycDQuickGO ontologyBLASTP
144890214503561455translocation machinery componentQuickGO ontologyBLASTP
14503721450959588pathogenicity island 2 effector protein SseDQuickGO ontologyBLASTP
14509621451378417pathogenicity island 2 effector protein SseEQuickGO ontologyBLASTP
14514361451864429type III secretion low calcium response chaperone LcrHSycDQuickGO ontologyBLASTP
14518801452662783secretion system effector protein SseFQuickGO ontologyBLASTP
14526591453348690secretion system effector protein SseGQuickGO ontologyBLASTP
14534411453656216type III secretion apparatus needle proteinQuickGO ontologyBLASTP
14536971453924228type III secretion system protein SsaHQuickGO ontologyBLASTP
14539211454184264type III secretion system apparatus proteinQuickGO ontologyBLASTP
14541811454930750type III secretion apparatus lipoprotein YscJHrcJ family proteinQuickGO ontologyBLASTP
14552241455496273secretion system apparatusQuickGO ontologyBLASTP
14554931456167675type III secretion apparatus protein HrpEYscL family proteinQuickGO ontologyBLASTP
14561571457149993secretion system apparatus protein SsaLQuickGO ontologyBLASTP
14572071457575369secretion system apparatus protein SsaMQuickGO ontologyBLASTP
145756014596052046secretion system apparatus protein SsaVQuickGO ontologyBLASTP
145959514608961302type III secretion system ATPaseQuickGO ontologyBLASTP
14609081461276369secretion system apparatus protein SsaOQuickGO ontologyBLASTP
14612901461631342secretion system apparatus protein SsaPQuickGO ontologyBLASTP
14616121462580969type III secretion system proteinQuickGO ontologyBLASTP
14626481463295648type III secretion system proteinQuickGO ontologyBLASTP
14632921463558267secretion system apparatus protein SsaSQuickGO ontologyBLASTP
14635591464338780type III secretion apparatus protein SpaRYscTHrcTQuickGO ontologyBLASTP
146433514653931059secretion system apparatus protein SsaUQuickGO ontologyBLASTP
146587614672491374multidrug efflux proteinQuickGO ontologyBLASTP
14674661468107642riboflavin synthase subunit alphaQuickGO ontologyBLASTP
146814914692971149cyclopropane-fatty-acyl-phospholipid synthaseQuickGO ontologyBLASTP
146958714707921206inner membrane transport protein YdhCQuickGO ontologyBLASTP
14709051471837933DNA-binding transcriptional regulatorQuickGO ontologyBLASTP
147183414728591026DNA-binding transcriptional repressor PurRQuickGO ontologyBLASTP