Pre_GI: BLASTP Hits

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Query: NC_009012:3224000:3224039 Clostridium thermocellum ATCC 27405, complete genome

Start: 3224039, End: 3224593, Length: 555

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016627:762000:776639776639777193555Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor6e-76283
NC_019897:329945:346389346389346979591Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor1e-27122
NC_012673:1540000:154720815472081547783576Exiguobacterium sp. AT1b, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-26119
NC_018665:139646:154042154042154605564Exiguobacterium antarcticum B7 chromosome, complete genomeRNA polymerase sigma factor SigW3e-26117
NC_011567:139598:151917151917152480564Anoxybacillus flavithermus WK1, complete genomeDNA-directed RNA polymerase specialized sigma subunit5e-26117
NC_010556:141374:154091154091154654564Exiguobacterium sibiricum 255-15, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-26116
NC_004193:241480:250169250169250732564Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase sigma-70 factor5e-25114
NC_020272:3706722:372792437279243728487564Bacillus amyloliquefaciens IT-45, complete genomeRNA polymerase sigma factor SigW1e-24112
NC_020410:198000:198744198744199307564Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRNA polymerase ECF(Extracytoplasmic function)-type sigma factor W1e-24112
NC_014551:199500:199660199660200223564Bacillus amyloliquefaciens DSM 7, complete genomeRNA polymerase ECF(extracytoplasmic function)-type sigma factor W1e-24112
NC_017188:177500:177639177639178202564Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA polymerase sigma factor SigW1e-24112
NC_017190:182449:182449182449183012564Bacillus amyloliquefaciens LL3 chromosome, complete genomeRNA polymerase sigma factor1e-24112
NC_017191:183500:183549183549184112564Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA polymerase sigma factor SigW1e-24112
NC_021184:3149000:315104331510433151618576Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family2e-24111
NC_014829:178000:186205186205186768564Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-24109
NC_014210:5752651:575645957564595757085627Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,RNA polymerase, sigma-24 subunit, ECF subfamily1e-22106
NC_015914:2769042:276844027684402769051612Cyclobacterium marinum DSM 745 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-22104
NC_008536:5192235:520608052060805206640561Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-22104
NC_007298:2170181:217566021756602176259600Dechloromonas aromatica RCB, complete genomeRNA polymerase sigma-70 factor2e-2099
NC_010995:2547164:254810525481052548695591Cellvibrio japonicus Ueda107, complete genomeRNA polymerase sigma-H factor (Sigma-30)2e-2098.6
NC_008554:1623041:164580616458061646414609Syntrophobacter fumaroxidans MPOB, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-2098.2
NC_012660:1579204:161309716130971613678582Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor AlgU3e-2097.8
NC_014098:2225174:224373822437382244325588Bacillus tusciae DSM 2912 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1995.9
NC_016627:689406:701226701226701768543Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-1995.1
NC_012483:1567253:158365615836561584234579Acidobacterium capsulatum ATCC 51196, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-1994.4
NC_016631:5378810:537881053788105379649840Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit4e-1890.9
NC_011566:3994239:399821439982143998792579Shewanella piezotolerans WP3, complete genomeRNA polymerse sigmaE factor5e-1890.9
NC_009438:1282022:129610312961031296681579Shewanella putrefaciens CN-32 chromosome, complete genomeRNA polymerase sigma factor RpoE1e-1789.4
NC_008750:3435495:343614234361423436720579Shewanella sp. W3-18-1, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1789.4
NC_012982:711122:746813746813747382570Hirschia baltica ATCC 49814, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1788.2
NC_013929:5135285:515159451515945152304711Streptomyces scabiei 87.22 chromosome, complete genomesigma factor5e-1787
NC_003155:5253923:527524952752495275962714Streptomyces avermitilis MA-4680, complete genomeRNA polymerase sigma-70 factor7e-1786.7
NC_009142:267550:269255269255269797543Saccharopolyspora erythraea NRRL 2338, complete genomeRNA polymerase sigma-70 factor, ECF family1e-1685.9
NC_014393:4541000:454485545448554545400546Clostridium cellulovorans 743B chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1685.5
NC_016803:1646342:166923316692331669781549Desulfovibrio desulfuricans ND132 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-1685.5
NC_008536:2961460:296649229664922967064573Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1685.1
NC_003888:4251867:428257742825774283287711Streptomyces coelicolor A3(2), complete genomeRNA polymerase sigma-70 factor3e-1684.7
NC_018750:3964784:398322139832213983961741Streptomyces venezuelae ATCC 10712, complete genomeRNA polymerase sigma-70 factor5e-1684
NC_012880:3241886:326005132600513260626576Dickeya dadantii Ech703, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1683.6
NC_012214:1117325:114286111428611143436576Erwinia pyrifoliae Ep1/96, complete genomeRNA polymerase sigma E6e-1683.6
NC_015064:2341152:236514523651452365786642Acidobacterium sp. MP5ACTX9 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1582.8
NC_011898:426951:428407428407428976570Clostridium cellulolyticum H10, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1582.4
NC_014828:541874:550982550982551533552Ethanoligenens harbinense YUAN-3 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1582
NC_016114:3655005:367332236733223674023702Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-1581.3
NC_015589:2019370:202926920292692029814546Desulfotomaculum ruminis DSM 2154 chromosome, complete genomesigma-70 family RNA polymerase sigma factor4e-1580.9
NC_021182:3409199:341352734135273414072546Clostridium pasteurianum BC1, complete genomeRNA polymerase sigma factor, sigma-70 family4e-1580.9
NC_014148:3368519:337293333729333373580648Planctomyces limnophilus DSM 3776 chromosome, complete genomeRNA polymerase sigma factor, sigma-70 family5e-1580.5
NC_012912:1200000:122636512263651226940576Dickeya zeae Ech1591, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1580.1
NC_015953:3684065:370288037028803703584705Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1479.3
NC_012225:1657248:166270016627001663245546Brachyspira hyodysenteriae WA1, complete genomeR polymerase sigma-70 factor 21e-1479
NC_009012:2953638:301233430123343012897564Clostridium thermocellum ATCC 27405, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1479
NC_017243:424132:440723440723441268546Brachyspira intermedia PWS/A chromosome, complete genomeR polymerase sigma-70 factor 22e-1479
NC_008435:854576:876605876605877288684Rhodopseudomonas palustris BisA53, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1477
NC_014657:1518721:152332215233221523873552Caldicellulosiruptor owensensis OL chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily8e-1476.6
NC_002696:2941644:296405329640532964613561Caulobacter crescentus CB15, complete genomeRNA polymerase sigma-70 factor1e-1375.9
NC_011916:2967624:299003329900332990593561Caulobacter crescentus NA1000 chromosome, complete genomeRNA polymerase sigma factor1e-1375.9
NC_013173:1712138:173775417377541738296543Desulfomicrobium baculatum DSM 4028, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1375.5
NC_014829:1376253:138816813881681388734567Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1375.1
NC_007333:3626510:363293636329363633556621Thermobifida fusca YX, complete genomeRNA polymerase sigma-70 factor2e-1375.1
NC_011894:2747491:276819727681972768877681Methylobacterium nodulans ORS 2060, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1374.7
NC_014721:1777644:178173617817361782287552Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeRNA polymerase, sigma-24 subunit, ecf subfamily4e-1374.3
NC_008391:2045348:206876820687682069472705Burkholderia cepacia AMMD chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily4e-1374.3
NC_015172:1075592:107559210755921076101510Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-1373.9
NC_017955:3731480:383478738347873835308522Modestobacter marinus, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-1373.6
NC_015949:1180755:118484711848471185398552Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-1373.6
NC_014815:5888934:589354558935455894543999Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily1e-1273.2
NC_004193:3215500:321633632163363216875540Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase ECF-type sigma factor1e-1272.8
NC_009925:1184442:118898911889891189603615Acaryochloris marina MBIC11017, complete genomeRNA polymerase sigma-24 subunit1e-1272.8
NC_014720:1161841:117795711779571178508552Caldicellulosiruptor kronotskyensis 2002 chromosome, completeRNA polymerase, sigma-24 subunit, ecf subfamily1e-1272.8
NC_011961:304158:307073307073307639567Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-1272.8
NC_014392:969498:100562310056231006174552Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1272.8
NC_013730:1572889:158410515841051584656552Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1272.4
NC_010552:58294:958139581396517705Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily2e-1272
NC_007760:535825:551316551316552005690Anaeromyxobacter dehalogenans 2CP-C, complete genomesigma-24 (FecI-like)3e-1271.6
NC_010320:671699:672453672453672983531Thermoanaerobacter sp. X514 chromosome, complete genomeRNA polymerase sigma factor SigY3e-1271.6
NC_014171:1018338:103091910309191031539621Bacillus thuringiensis BMB171 chromosome, complete genomeRNA polymerase ECF-type sigma factor3e-1271.6
NC_014933:602312:614199614199614702504Bacteroides helcogenes P 36-108 chromosome, complete genomeRNA polymerase, sigma subunit, ECF family4e-1271.2
NC_012491:5914500:591721659172165917788573Brevibacillus brevis NBRC 100599, complete genomeRNA polymerase ECF-type sigma factor4e-1270.9
NC_019908:1296870:130311113031111303680570Brachyspira pilosicoli P43/6/78 chromosome, complete genomeRNA polymerase sigma-24 subunit5e-1270.5
NC_012034:1783912:178800617880061788557552Anaerocellum thermophilum DSM 6725, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-1270.5
NC_014330:1957725:196524019652401965806567Brachyspira pilosicoli 95/1000 chromosome, complete genomeRNA polymerase sigma-24 subunit6e-1270.5
NC_013093:2230171:223517522351752235852678Actinosynnema mirum DSM 43827, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1270.1
NC_011725:1032500:104531410453141045847534Bacillus cereus B4264 chromosome, complete genomeRNA polymerase factor sigma C1e-1169.7
NC_014483:4740214:475311047531104753685576Paenibacillus polymyxa E681 chromosome, complete genomeDNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein1e-1169.3
NC_005957:5091150:510720551072055107735531Bacillus thuringiensis serovar konkukian str. 97-27, completeRNA polymerase sigma-70 factor2e-1168.9
NC_011773:5144990:516152451615245162051528Bacillus cereus AH820 chromosome, complete genomeRNA polymerase sigma factor2e-1168.9
NC_016609:4834378:488406148840614884942882Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-1168.6
NC_015673:464630:467907467907468443537Corynebacterium resistens DSM 45100 chromosome, complete genomeECF-family sigma factor W2e-1168.6
NC_017243:685783:693812693812694471660Brachyspira intermedia PWS/A chromosome, complete genomeRpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma242e-1168.6
NC_015172:1120000:113691711369171137477561Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1167.8
NC_004557:558500:573257573257573847591Clostridium tetani E88, complete genomeRNA polymerase sigma-70 factor5e-1167.4
NC_012472:5126186:514219551421955142722528Bacillus cereus 03BB102, complete genomeRNA polymerase sigma-70 factor, ECF subfamily5e-1167.4
NC_014652:1032711:107042510704251070976552Caldicellulosiruptor hydrothermalis 108 chromosome, completeRNA polymerase, sigma-24 subunit, ecf subfamily5e-1167.4
NC_016779:5079460:509547950954795096006528Bacillus cereus F837/76 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor5e-1167.4
NC_008600:5113765:512978451297845130407624Bacillus thuringiensis str. Al Hakam, complete genomeRNA polymerase sigma-70 factor, ECF subfamily5e-1167.4
NC_013169:513327:539599539599540546948Kytococcus sedentarius DSM 20547, complete genomeRNA polymerase sigma-70 factor, TIGR02960 family5e-1167.4
NC_012660:165559:186028186028186600573Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor5e-1167.4
NC_014335:5038601:505489950548995055426528Bacillus cereus biovar anthracis str. CI chromosome, completeRNA polymerase sigma-70 factor5e-1167.4
NC_012796:1645856:164776616477661648332567Desulfovibrio magneticus RS-1, complete genomeRNA polymerase ECF-type sigma factor6e-1167
NC_014923:79370:919919199192533543Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeRNA polymerase sigma factor, sigma-70 family9e-1166.6
NC_017208:5339331:535609453560945356621528Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeRNA polymerase sigma factor9e-1166.6
NC_004129:195347:212505212505213086582Pseudomonas fluorescens Pf-5, complete genomeRNA polymerase sigma-70 factor8e-1166.6
NC_014150:1006000:102603910260391026611573Brachyspira murdochii DSM 12563 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-1166.6
NC_009437:2367842:237191723719172372468552Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeRNA polymerase sigma factor SigY1e-1066.2
NC_010723:1133163:113316311331631133726564Clostridium botulinum E3 str. Alaska E43, complete genomeRNA polymerase sigma-70 factor, family1e-1066.2
NC_014623:9363409:937033593703359370856522Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeRNA polymerase ECF-type sigma factor1e-1066.2
NC_010571:2943369:297357029735702974259690Opitutus terrae PB90-1, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1066.2
NC_016906:4123000:413998141399814140532552Gordonia polyisoprenivorans VH2 chromosome, complete genomeRNA polymerase sigma factor1e-1066.2
NC_006274:5155395:517165151716515172184534Bacillus cereus E33L, complete genomeRNA polymerase sigma-70 factor1e-1065.9
NC_011969:5063283:507947350794735080006534Bacillus cereus Q1 chromosome, complete genomeRNA polymerase sigma factor2e-1065.5
NC_013037:5395951:539916253991625399872711Dyadobacter fermentans DSM 18053, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1065.5
NC_015846:369500:389672389672390220549Capnocytophaga canimorsus Cc5 chromosome, complete genomesigma-W factor2e-1065.5
NC_013730:4399643:441409444140944414645552Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1065.1
NC_017080:1194199:119784911978491198454606Phycisphaera mikurensis NBRC 102666, complete genomeRNA polymerase ECF-type sigma factor2e-1065.1
NC_008536:3160540:318629731862973186758462Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1065.1
NC_015953:4908069:492497149249714925813843Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-1065.1
NC_012581:5085915:510147551014755102002528Bacillus anthracis str. CDC 684 chromosome, complete genomeRNA polymerase sigma factor3e-1064.7
NC_011773:1050000:106249510624951063028534Bacillus cereus AH820 chromosome, complete genomeRNA polymerase factor sigma C5e-1064.3
NC_006274:1040836:105320610532061053739534Bacillus cereus E33L, complete genomeRNA polymerase sigma C factor5e-1064.3
NC_007530:1007140:102029010202901020823534Bacillus anthracis str. 'Ames Ancestor', complete genomeRNA polymerase sigma C factor4e-1064.3
NC_003997:1007139:102029010202901020823534Bacillus anthracis str. Ames, complete genomeRNA polymerase sigma C factor4e-1064.3
NC_012659:1008028:102019010201901020723534Bacillus anthracis str. A0248, complete genomeRNA polymerase factor sigma C4e-1064.3
NC_008600:1042477:105546210554621055995534Bacillus thuringiensis str. Al Hakam, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-1064.3
NC_005957:1037205:104952510495251050058534Bacillus thuringiensis serovar konkukian str. 97-27, completeRNA polymerase sigma C factor4e-1064.3
NC_016779:991298:100202010020201002553534Bacillus cereus F837/76 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor4e-1064.3
NC_003450:788000:804408804408805028621Corynebacterium glutamicum ATCC 13032, complete genomeRNA polymerase sigma factor RpoE4e-1064.3
NC_009342:951761:964659964659965279621Corynebacterium glutamicum R chromosome, complete genomeRNA polymerase sigma factor RpoE4e-1064.3
NC_012880:3982383:400842040084204008974555Dickeya dadantii Ech703, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1064.3
NC_015496:2279829:228225522822552282800546Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-1063.9
NC_007509:71954:736517365174262612Burkholderia sp. 383 chromosome 3, complete sequencesigma-24 (FecI-like)5e-1063.9
NC_005945:1008000:102009610200961020716621Bacillus anthracis str. Sterne, complete genomeRNA polymerase sigma C factor5e-1063.9
NC_011772:5222917:524277052427705243297528Bacillus cereus G9842, complete genomeRNA polymerase sigma-70 factor, ECF subfamily5e-1063.9
NC_008536:5192235:520295352029535203483531Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-1063.9
NC_009921:4757148:477616347761634776723561Frankia sp. EAN1pec, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-1063.9
NC_013943:1019213:103299510329951033477483Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-1063.5
NC_010475:2188827:218983121898312190430600Synechococcus sp. PCC 7002, complete genometranscription initiation factor sigma E7e-1063.5
NC_019673:3041936:304282330428233043461639Saccharothrix espanaensis DSM 44229 complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1063.5
NC_009952:3596399:360359636035963604171576Dinoroseobacter shibae DFL 12, complete genomeRNA polymerase sigma factor2e-0962.4
NC_019892:3086493:3099373309937331026813309Singulisphaera acidiphila DSM 18658 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0962.4
NC_007907:2995889:301049930104993011068570Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-0962.4
NC_013730:6901725:691767169176716918270600Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0962.4
NC_011772:1011220:102153510215351022068534Bacillus cereus G9842, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-0962
NC_012914:5225609:523278752327875233743957Paenibacillus sp. JDR-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0961.6
NC_015703:5272193:529904352990435299582540Runella slithyformis DSM 19594 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0961.6
NC_012704:1747539:176790617679061768508603Corynebacterium kroppenstedtii DSM 44385, complete genomeECF-family sigma factor H3e-0961.6
NC_017208:1050414:106404110640411064574534Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeRNA polymerase ECF-type sigma factor3e-0961.6
NC_016631:3917253:393719939371993937939741Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0961.6
NC_014829:4422314:442603644260364426554519Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0961.2
NC_017200:1157835:117323311732331173853621Bacillus thuringiensis serovar finitimus YBT-020 chromosome,RNA polymerase factor sigma C3e-0961.2
NC_014817:332000:346335346335346922588Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ecf subfamily4e-0961.2
NC_017079:2634623:264607226460722646950879Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeputative RNA polymerase ECF-type sigma factor4e-0961.2
NC_016048:3063888:308588730858873086366480Oscillibacter valericigenes Sjm18-20, complete genomeRNA polymerase ECF subfamily sigma factor5e-0960.8
NC_003228:3455405:345667234566723457184513Bacteroides fragilis NCTC 9343, complete genomeputative RNA polymerase sigma factor5e-0960.8
NC_016776:3485688:348838334883833488895513Bacteroides fragilis 638R, complete genomeputative RNA polymerase sigma factor5e-0960.8
NC_009454:1577319:163526116352611635848588Pelotomaculum thermopropionicum SI, complete genomeDNA-directed RNA polymerase specialized sigma subunit5e-0960.8
NC_015311:2626850:266808926680892668571483Prevotella denticola F0289 chromosome, complete genomeSigma-70 region 25e-0960.8
NC_009615:3581619:358324535832453583757513Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor6e-0960.5
NC_012560:2315350:232811423281142328680567Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma-70 factor6e-0960.5
NC_021150:2315362:232812623281262328692567Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor SigX6e-0960.5
NC_019896:1483073:148418814841881484718531Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeRNA polymerase sigma factor SigZ7e-0960.1
NC_014532:1307983:133179013317901332392603Halomonas elongata DSM 2581, complete genomeK03088 RNA polymerase sigma-70 factor, ECF subfamily1e-0859.7
NC_015144:1576047:158985115898511590342492Weeksella virosa DSM 16922 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0859.7
NC_014033:1664500:168220716822071682704498Prevotella ruminicola 23 chromosome, complete genomeECF family RNA polymerase sigma-70 factor1e-0859.7
NC_004557:691944:708021708021708554534Clostridium tetani E88, complete genomeRNA polymerase sigma factor sigV1e-0859.7
NC_012811:139498:143577143577144257681Methylobacterium extorquens AM1 megaplasmid, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-0859.7
NC_011757:1067543:107244910724491073129681Methylobacterium chloromethanicum CM4, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0859.7
NC_010184:1017000:102909510290951029628534Bacillus weihenstephanensis KBAB4, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0859.3
NC_011969:1084000:109474110947411095211471Bacillus cereus Q1 chromosome, complete genomeRNA polymerase factor sigma c1e-0859.3
NC_014328:3294086:329497232949723295487516Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeRNA polymerase sigma-E factor2e-0858.9
NC_011830:3081726:309657030965703097058489Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0858.9
NC_007907:1996194:201177320117732012261489Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0858.9
NC_016627:4323370:436892043689204369462543Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0858.9
NC_016620:24354:450414504145571531Bacteriovorax marinus SJ, complete genomeputative RNA polymerase ECF-type sigma factor2e-0858.9
NC_014311:1106871:112273411227341123375642Ralstonia solanacearum PSI07 chromosome, complete genomeRNA polymerase sigma factor, sigma-242e-0858.9
NC_013891:353625:367815367815368318504Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeRNA polymerase ECF-type sigma factor2e-0858.9
NC_010172:480000:497599497599498279681Methylobacterium extorquens PA1, complete genomeRNA polymerase sigma factor, sigma-70 family2e-0858.5
NC_011830:1190502:120506412050641205564501Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0858.5
NC_015589:1899329:190623419062341906758525Desulfotomaculum ruminis DSM 2154 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0858.5
NC_007517:3151742:315661031566103157230621Geobacter metallireducens GS-15, complete genomeRNA polymerase sigma-70 factor2e-0858.5
NC_016582:5769080:579130957913095791824516Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative sigma factor3e-0858.2
NC_021184:3174500:318039731803973180936540Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family3e-0858.2
NC_010172:1522707:154378715437871544350564Methylobacterium extorquens PA1, complete genomeRNA polymerase sigma factor, sigma-70 family3e-0858.2
NC_012778:2049694:206882820688282069400573Eubacterium eligens ATCC 27750, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-0857.8
NC_015436:440033:442515442515443042528Spirochaeta coccoides DSM 17374 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0857.8
NC_006270:568171:592922592922593419498Bacillus licheniformis ATCC 14580, complete genomeRNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V)4e-0857.8
NC_006322:567987:592712592712593209498Bacillus licheniformis ATCC 14580, complete genomeSigV4e-0857.8
NC_015660:1918307:191991019199101920395486Geobacillus thermoglucosidasius C56-YS93 chromosome, completeECF subfamily RNA polymerase sigma-24 subunit4e-0857.8
NC_016631:3114000:313063631306363131205570Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0857.8
NC_019897:763412:777211777211777708498Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor5e-0857.4
NC_011830:3369282:338259733825973383103507Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0857.4
NC_014655:2782707:278688527868852787409525Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA polymerase, sigma subunit, ecf family7e-0857
NC_015172:1334958:135847113584711359013543Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0857
NC_017273:352150:380081380081380596516Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completeECF subfamily RNA polymerase sigma-24 subunit6e-0857
NC_021184:3174500:320020332002033200760558Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family8e-0856.6
NC_006510:1731939:175291017529101753395486Geobacillus kaustophilus HTA426, complete genomeDNA-directed RNA polymerase ECF-type sigma factor9e-0856.6
NC_015277:2283530:229844122984412299025585Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.8
NC_010002:4572573:461546046154604616068609Delftia acidovorans SPH-1, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.8
NC_014829:259707:280208280208280738531Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0755.8
NC_012811:959725:963246963246963947702Methylobacterium extorquens AM1 megaplasmid, complete sequenceRNA polymerase ECF-type sigma factor1e-0755.8
NC_016935:4038265:405515440551544056110957Paenibacillus mucilaginosus 3016 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0755.8
NC_016935:4117485:412215241221524122664513Paenibacillus mucilaginosus 3016 chromosome, complete genomeRNA polymerase ECF-type sigma factor1e-0755.8
NC_014650:1893758:189647118964711896956486Geobacillus sp. Y4.1MC1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0755.8
NC_007907:2306561:230812823081282308652525Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0755.5
NC_016109:5290000:529044352904435291108666Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor2e-0755.5
NC_010175:2062932:206293220629322063504573Chloroflexus aurantiacus J-10-fl, complete genomeRNA polymerase sigma factor, sigma-70 family2e-0755.5
NC_007298:2769525:279111027911102791682573Dechloromonas aromatica RCB, complete genomeRNA polymerase sigma-70 factor2e-0755.5
NC_004663:4373902:437668943766894377198510Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor2e-0755.5
NC_014364:4416467:442893744289374429710774Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.5
NC_016906:1458158:147173414717341472315582Gordonia polyisoprenivorans VH2 chromosome, complete genomesigma-70 family RNA polymerase sigma factor3e-0755.1
NC_016631:1329702:134785713478571348567711Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0755.1
NC_016609:6136411:615649361564936157086594Niastella koreensis GR20-10 chromosome, complete genomeRNA polymerase, sigma subunit, SigX3e-0754.7
NC_007963:1190847:124467112446711245285615Chromohalobacter salexigens DSM 3043, complete genomesigma-24 (FecI-like)4e-0754.7
NC_015311:720631:726166726166726678513Prevotella denticola F0289 chromosome, complete genomeSigma-70 region 24e-0754.3
NC_004193:1335626:133948713394871340014528Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase ECF-type sigma factor4e-0754.3
NC_016048:2678205:270587327058732706352480Oscillibacter valericigenes Sjm18-20, complete genomeRNA polymerase ECF subfamily sigma factor5e-0754.3
NC_009706:56000:664186641866894477Clostridium kluyveri DSM 555 chromosome, complete genomesigma factor6e-0753.9
NC_011837:56000:664186641866894477Clostridium kluyveri NBRC 12016, complete genomehypothetical protein6e-0753.9
NC_015844:1188360:120641312064131207012600Zobellia galactanivorans, complete genomeRNA polymerase ECF-type sigma factor6e-0753.9
NC_009668:1726000:173066117306611731212552Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceECF subfamily RNA polymerase sigma-24 factor6e-0753.9
NC_009922:2323083:232774623277462328276531Alkaliphilus oremlandii OhILAs, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0753.9
NC_013440:1727134:174839817483981749084687Haliangium ochraceum DSM 14365, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0753.5
NC_021184:3174500:318582031858203186374555Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family7e-0753.5
NC_014758:10687:185401854018992453Calditerrivibrio nitroreducens DSM 19672 chromosome, completeRNA polymerase, sigma-24 subunit, ecf subfamily8e-0753.5
NC_014915:727631:743122743122743703582Geobacillus sp. Y412MC52 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0653.1
NC_013411:1587689:160318016031801603761582Geobacillus sp. Y412MC61, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0653.1
NC_014206:2912945:291424629142462914827582Geobacillus sp. C56-T3 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0653.1
NC_015690:6521740:655173465517346552246513Paenibacillus mucilaginosus KNP414 chromosome, complete genomeRNA polymerase ECF-type sigma factor9e-0753.1
NC_013947:4363250:437485543748554375406552Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRNA polymerase sigma-24 subunit, ECF subfamily1e-0652.8
NC_013061:1236235:125870212587021259268567Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma factor, sigma-70 family1e-0652.8
NC_016627:4270949:428432542843254284810486Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor1e-0652.8
NC_019897:3810000:385687138568713857380510Thermobacillus composti KWC4 chromosome, complete genomeSigM family RNA polymerase sigma factor1e-0652.8
NC_003909:1205605:122684212268421227327486Bacillus cereus ATCC 10987, complete genomeRNA polymerase sigma-70 factor1e-0652.8
NC_020134:2801199:280191428019142802471558Clostridium stercorarium subsp. stercorarium DSM 8532, completeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.4
NC_017316:2581781:258269025826902583187498Enterococcus faecalis OG1RF chromosome, complete genomeRNA polymerase sigma-70 factor2e-0652
NC_004668:3053119:305311930531193053616498Enterococcus faecalis V583, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-0652
NC_016609:2150863:220256522025652203131567Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-0652
NC_009668:1726000:173529217352921735792501Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceECF subfamily RNA polymerase sigma-24 factor2e-0652
NC_018750:3481476:348147634814763482261786Streptomyces venezuelae ATCC 10712, complete genomeputative RNA polymerase ECF-subfamily sigma factor3e-0651.6
NC_021184:1024305:103925110392511039850600Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family3e-0651.6
NC_013061:3390399:339834033983403398918579Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma-70 factor4e-0651.2
NC_015846:790374:805927805927806496570Capnocytophaga canimorsus Cc5 chromosome, complete genomesigma-W factor5e-0650.8
NC_010337:2848360:286534728653472865868522Heliobacterium modesticaldum Ice1, complete genomeRNA polymerase sigma-70, region 45e-0650.8
NC_010337:2793667:280469028046902805241552Heliobacterium modesticaldum Ice1, complete genomeRNA polymerase sigma factor5e-0650.8
NC_015172:850802:875550875550876032483Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.4
NC_013722:1689125:169112716911271691711585Xanthomonas albilineans, complete genomeprobable rna polymerase sigma-e factor protein8e-0650.1
NC_014655:424486:427004427004427549546Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily1e-0549.7
NC_003997:2715623:273815027381502738692543Bacillus anthracis str. Ames, complete genomeRNA polymerase sigma-70 factor1e-0549.7
NC_012659:2715651:273817827381782738756579Bacillus anthracis str. A0248, complete genomeRNA polymerase sigma factor1e-0549.7
NC_005945:2716000:273861327386132739191579Bacillus anthracis str. Sterne, complete genomeRNA polymerase sigma-70 factor1e-0549.7