Pre_GI Gene

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Host: NC_009012 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009012:2953638 Clostridium thermocellum ATCC 27405, complete genome

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
295363829549271290transposase IS116IS110IS902QuickGO ontologyBLASTP
295537929564251047hypothetical proteinBLASTP
29564462956922477hypothetical proteinBLASTP
29569392957352414hypothetical proteinBLASTP
295754529593801836phage tape measure proteinQuickGO ontologyBLASTP
29593772960036660Peptidoglycan-binding LysMQuickGO ontologyBLASTP
29600332960977945hypothetical proteinBLASTP
29612042961599396hypothetical proteinBLASTP
296159929626571059Baseplate J-like proteinQuickGO ontologyBLASTP
29626472963249603phage-like element PBSX proteinQuickGO ontologyBLASTP
29632592963543285hypothetical protein
296354629649281383hypothetical proteinBLASTP
29649332965253321hypothetical proteinBLASTP
29654952965785291hypothetical protein
29658012966457657N-acetylmuramoyl-L-alanine amidaseQuickGO ontologyBLASTP
29665492966896348hypothetical proteinBLASTP
29670702967705636hypothetical protein
29676902968121432hypothetical protein
29686412969126486CMPdCMP deaminase zinc-bindingQuickGO ontologyBLASTP
2969231296932191tRNA-SerQuickGO ontology
29695622970170609Cupin 2 conserved barrelQuickGO ontologyBLASTP
297019929714881290hypothetical proteinBLASTP
297153329725611029transcriptional regulator LacI familyQuickGO ontologyBLASTP
297304729760883042S-layer-like domain containing proteinQuickGO ontologyBLASTP
29762732977088816peptidase U57 YabGQuickGO ontologyBLASTP
29772322978131900TOPRIM domain containing proteinQuickGO ontologyBLASTP
29781952979190996DNA topoisomeraseQuickGO ontologyBLASTP
29794402980297858protein of unknown function DUF368QuickGO ontologyBLASTP
29807272981575849MscS Mechanosensitive ion channelQuickGO ontologyBLASTP
29817692981969201protein of unknown function DUF951QuickGO ontologyBLASTP
298205729832351179peptidase S1 and S6 chymotrypsinHapQuickGO ontologyBLASTP
29833412983634294hypothetical protein
29837842984248465Guanine deaminaseQuickGO ontologyBLASTP
298463029862581629acetolactate synthase large subunit biosynthetic typeQuickGO ontologyBLASTP
29862902986802513acetolactate synthase small subunitQuickGO ontologyBLASTP
29868102987805996ketol-acid reductoisomeraseQuickGO ontologyBLASTP
2987849298946816202-isopropylmalate synthasehomocitrate synthase family proteinQuickGO ontologyBLASTP
29895082989765258hypothetical proteinBLASTP
29899612990668708DNA-directed RNA polymerase sigma factorQuickGO ontologyBLASTP
299066829922901623membrane associated proteinQuickGO ontologyBLASTP
29924842992864381hypothetical proteinBLASTP
29931342993577444transcriptional regulator BadMRrf2 familyQuickGO ontologyBLASTP
29938072994802996glutamyl-tRNA reductaseQuickGO ontologyBLASTP
29948442995272429precorrin-2 oxidase ferrochelataseQuickGO ontologyBLASTP
29952472996125879porphobilinogen deaminaseQuickGO ontologyBLASTP
299612529976061482uroporphyrin-III C-methyltransferaseQuickGO ontologyBLASTP
29978752998855981Porphobilinogen synthaseQuickGO ontologyBLASTP
299885530001381284glutamate-1-semialdehyde-21-aminomutaseQuickGO ontologyBLASTP
300044730015171071sulfate ABC transporter periplasmic sulfate-binding proteinQuickGO ontologyBLASTP
30015423002390849sulfate ABC transporter inner membrane subunit CysTQuickGO ontologyBLASTP
30024773003361885sulfate ABC transporter inner membrane subunit CysWQuickGO ontologyBLASTP
300340430044681065sulfate ABC transporter ATPase subunitQuickGO ontologyBLASTP
30045363005255720adenylylsulfate reductase thioredoxin dependentQuickGO ontologyBLASTP
30055433006424882phosphoadenosine phosphosulfate reductaseQuickGO ontologyBLASTP
300642630082251800sulfate adenylyltransferase large subunitQuickGO ontologyBLASTP
30082433008452210thiamine biosynthesis protein ThiSQuickGO ontologyBLASTP
30084493009261813UBATHIF-type NADFAD binding foldQuickGO ontologyBLASTP
30092853009704420Mov34MPNPAD-1QuickGO ontologyBLASTP
30097053010577873nitrite and sulphite reductase 4Fe-4S regionQuickGO ontologyBLASTP
30106153010860246SirA-like proteinQuickGO ontologyBLASTP
301093430123311398Spore germination protein-like proteinQuickGO ontologyBLASTP
30123343012897564RNA polymerase sigma-24 subunit ECF subfamilyQuickGO ontologyBLASTP
301323730143221086signal transduction histidine kinase regulating citratemalate metabolismQuickGO ontologyBLASTP
30143303015023694
30155073015833327hypothetical protein
301603230175431512Alpha-N-arabinofuranosidaseQuickGO ontologyBLASTP