Pre_GI Gene

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Host: NC_011961 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011961:304158 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
303190304161972DD carboxypeptidaseQuickGO ontologyBLASTP
304158305006849hypothetical proteinBLASTP
305003305797795methyltransferase putativeQuickGO ontologyBLASTP
3058123069661155protease DO family proteinQuickGO ontologyBLASTP
307073307639567RNA polymerase sigma-24 subunit ECF subfamilyQuickGO ontologyBLASTP
307636308382747hypothetical protein
3086183104621845oligopeptide ABC transporter periplasmic oligopeptide-binding proteinQuickGO ontologyBLASTP
310544311470927oligopeptide transport system permease protein OppCQuickGO ontologyBLASTP
311498312430933dipeptide transport system permease protein DppBQuickGO ontologyBLASTP
3127463137861041thioredoxin reductaseQuickGO ontologyBLASTP
313789314685897catechol 23-dioxygenaseQuickGO ontologyBLASTP
3147153163611647thiamine pyrophosphate enzyme central domain familyQuickGO ontologyBLASTP
316394317194801ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
3171913188071617feruloyl-CoA synthetaseQuickGO ontologyBLASTP
3188243199361113ABC transporter quaternary amine uptake transporter QAT family substrate-binding proteinQuickGO ontologyBLASTP
320064320873810ABC nitratesulfonatebicarbonate family transporter inner membrane subunitQuickGO ontologyBLASTP
3208833216567743-hydroxyacyl-CoA dehydrogenase NAD-bindingQuickGO ontologyBLASTP
321677322393717enoyl-CoA hydrataseisomeraseQuickGO ontologyBLASTP
3223903235711182amidohydrolase 3QuickGO ontologyBLASTP
323584324174591peptide synthaseQuickGO ontologyBLASTP
3241713265342364carbon monoxide dehydrogenase large chain COdehydrogenase subunit L CO-DH LQuickGO ontologyBLASTP
32653132739786723-dihydroxy-23-dihydro-phenylpropionate dehydrogenaseQuickGO ontologyBLASTP
327394327651258dihydrodiol dehydrogenaseQuickGO ontologyBLASTP
3276743282285553-phenylpropionate dioxygenase subunit beta Digoxigenin subunit betaQuickGO ontologyBLASTP
32826532963213683-phenylpropionate dioxygenase subunit alpha Digoxigenin subunit alphaQuickGO ontologyBLASTP
3296663306941029aldolaseQuickGO ontologyBLASTP
330806331549744GntR family transcriptional regulatorQuickGO ontologyBLASTP
3320583330801023thioredoxin reductaseQuickGO ontologyBLASTP
3332593347041446V-type sodium ATP synthase subunit J Na-translocating ATPase subunit JQuickGO ontologyBLASTP
3348873362931407potassium uptake protein KtrB putativeQuickGO ontologyBLASTP
336318336953636K uptake transporter trka family proteinQuickGO ontologyBLASTP
337006337785780fumarylacetoacetate hydrolase family proteinQuickGO ontologyBLASTP
337796338428633HD domain containing 2QuickGO ontologyBLASTP
3384733398101338magnesium and cobalt efflux protein CorCQuickGO ontologyBLASTP
340260340754495hypothetical protein
3407953424291635hypothetical protein
342390342971582NTPaseQuickGO ontologyBLASTP