Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:2801199 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
28011992801933735hypothetical proteinBLASTP
28019142802471558RNA polymerase sigma-24 subunit ECF subfamilyQuickGO ontologyBLASTP
28026702803266597S-adenosylmethionine-dependent methyltransferaseQuickGO ontologyBLASTP
28032592804206948tetratricopeptide TPR_2 repeat proteinQuickGO ontologyBLASTP
28042392805042804cobalt transporter permease protein CbiQQuickGO ontologyBLASTP
280510328068511749cobalt transporter ATP-binding protein CbiOQuickGO ontologyBLASTP
2806980280751053150S ribosomal protein L17QuickGO ontologyBLASTP
28075382808488951DNA-directed RNA polymerase subunit alphaQuickGO ontologyBLASTP
2808599280922562730S ribosomal protein S4QuickGO ontologyBLASTP
2809370280976539630S ribosomal protein S11QuickGO ontologyBLASTP
2809784281015236930S ribosomal protein S13QuickGO ontologyBLASTP
28102712810396126hypothetical protein
28104112810524114ribosomal protein L36 bacterial typeQuickGO ontology
28105582810776219translation initiation factor IF-1QuickGO ontologyBLASTP
28107902811080291hypothetical proteinBLASTP
28111582811883726methionine aminopeptidase MapQuickGO ontologyBLASTP
28119292812576648adenylate kinase AdkQuickGO ontologyBLASTP
281264728139421296protein translocase subunit SecYQuickGO ontologyBLASTP
2813944281438143850S ribosomal protein L15QuickGO ontologyBLASTP
28143962814575180r50S ibosomal protein L30QuickGO ontologyBLASTP
2814587281508750130S ribosomal protein S5QuickGO ontologyBLASTP
2815113281548136950S ribosomal protein L18QuickGO ontologyBLASTP
2815502281604454350S ribosomal protein L6QuickGO ontologyBLASTP
2816160281655839930S ribosomal protein S8QuickGO ontologyBLASTP
2816589281677418630S ribosomal protein S14 type ZQuickGO ontologyBLASTP
2816789281732854050S ribosomal protein L5QuickGO ontologyBLASTP
2817351281775240250S ribosomal protein L24QuickGO ontologyBLASTP
2817793281816136950S ribosomal protein L14QuickGO ontologyBLASTP
2818255281851225830S ribosomal protein S17QuickGO ontologyBLASTP
2818537281873720150S ribosomal protein L29QuickGO ontologyBLASTP
2818724281915843550S ribosomal protein L16QuickGO ontologyBLASTP
2819158281982066330S ribosomal protein S3QuickGO ontologyBLASTP
2819837282029846250S ribosomal protein L22QuickGO ontologyBLASTP
2820415282069628230S ribosomal protein S19QuickGO ontologyBLASTP
2820720282155383450S ribosomal protein L2QuickGO ontologyBLASTP
2821675282202835450S ribosomal protein L23QuickGO ontologyBLASTP
2822028282265462750S ribosomal protein L4QuickGO ontologyBLASTP