Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:195347 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1953472044819135adhesinhaemagglutinin HecA familyQuickGO ontologyBLASTP
205065205427363DNA-binding protein putativeQuickGO ontologyBLASTP
208815209081267hypothetical proteinBLASTP
209336209620285Protein of unknown function DUF497 superfamilyQuickGO ontologyBLASTP
209598209846249hypothetical proteinBLASTP
210070210630561conserved hypothetical protein TIGR00481 putativeQuickGO ontologyBLASTP
2107192124671749von Willebrand factor type A domain proteinQuickGO ontologyBLASTP
212505213086582RNA polymerase sigma-70 factorQuickGO ontologyBLASTP
213083213766684hypothetical proteinBLASTP
213839214024186hypothetical protein
214043214507465hypothetical proteinBLASTP
214491215342852hypothetical protein
21550621558277tRNA-ArgQuickGO ontology
216206216418213hypothetical protein
216433216660228rebB proteinQuickGO ontologyBLASTP
216685217353669hypothetical proteinBLASTP
217495218052558hypothetical protein
218166218480315RebB proteinQuickGO ontologyBLASTP
218535218849315rebB proteinQuickGO ontologyBLASTP
2192302206721443succinate-semialdehyde dehydrogenaseQuickGO ontologyBLASTP