Pre_GI: BLASTP Hits

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Query: NC_004129:195347:218166 Pseudomonas fluorescens Pf-5, complete genome

Start: 218166, End: 218480, Length: 315

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:195347:218535218535218849315Pseudomonas fluorescens Pf-5, complete genomerebB protein1e-35148
NC_010688:1435694:143716114371611437484324Xanthomonas campestris pv. campestris, complete genomehypothetical protein2e-28124
NC_007086:1457531:145899814589981459321324Xanthomonas campestris pv. campestris str. 8004, complete genomeRebB protein2e-28124
NC_017267:3333036:335595033559503356270321Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completeRebB protein1e-22105
NC_004129:195347:216433216433216660228Pseudomonas fluorescens Pf-5, complete genomerebB protein4e-0960.1
NC_015276:2948923:294892329489232949177255Marinomonas mediterranea MMB-1 chromosome, complete genomeanaerobic glycerol-3-phosphate dehydrogenase subunit C1e-0652
NC_015276:2948923:294928429492842949544261Marinomonas mediterranea MMB-1 chromosome, complete genomeanaerobic glycerol-3-phosphate dehydrogenase subunit C2e-0650.8
NC_006841:1264555:128340512834051283689285Vibrio fischeri ES114 chromosome II, complete sequenceanaerobic glycerol-3-phosphate dehydrogenase subunit C7e-0649.3
NC_007912:3828980:383262738326273832881255Saccharophagus degradans 2-40, complete genomeRebB protein9e-0648.9