Pre_GI Gene

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Host: NC_009438 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009438:1282022 Shewanella putrefaciens CN-32 chromosome, complete genome

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12820221282933912LysR family transcriptional regulatorQuickGO ontologyBLASTP
128298812840551068putative adenylateguanylate cyclaseQuickGO ontologyBLASTP
12841781284849672DNA mismatch repair proteinQuickGO ontologyBLASTP
12855371286061525dinucleoside polyphosphate hydrolaseQuickGO ontologyBLASTP
128608412883182235phosphoenolpyruvate-protein phosphotransferase PtsPQuickGO ontologyBLASTP
12883771289177801hypothetical proteinBLASTP
12892171290023807prolipoprotein diacylglyceryl transferaseQuickGO ontologyBLASTP
12900231290817795thymidylate synthaseQuickGO ontologyBLASTP
129093412921091176pH-dependent sodiumproton antiporterQuickGO ontologyBLASTP
12921061292492387hypothetical proteinBLASTP
12926001293508909transcriptional activator NhaRQuickGO ontologyBLASTP
12936031293842240hypothetical proteinBLASTP
12938921294263372hypothetical proteinBLASTP
129430012959131614L-aspartate oxidaseQuickGO ontologyBLASTP
12961031296681579RNA polymerase sigma factor RpoEQuickGO ontologyBLASTP
12967081297328621anti sigma-E protein RseAQuickGO ontologyBLASTP
12973411298273933sigma E regulatory protein MucBRseBQuickGO ontologyBLASTP
12982841298757474sigma E positive regulator RseCMucCQuickGO ontologyBLASTP
129892413007141791GTP-binding protein LepAQuickGO ontologyBLASTP