Pre_GI: BLASTP Hits

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Query: NC_004307:1620500:1621137 Bifidobacterium longum NCC2705, complete genome

Start: 1621137, End: 1622324, Length: 1188

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: This strain was isolated from infant feces. Normal human gut flora. Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014378:4428:3311331144351125Acetohalobium arabaticum DSM 5501 chromosome, complete genomeDNA replication and repair protein RecF2e-37156
NC_014378:525717:3311331144351125Acetohalobium arabaticum DSM 5501 chromosome, complete genomeDNA replication and repair protein RecF2e-37156
NC_015942:3185193:2979297940371059Acidithiobacillus ferrivorans SS3 chromosome, complete genomeDNA replication and repair protein recF4e-1169.7
NC_008578:2431074:3097309742121116Acidothermus cellulolyticus 11B, complete genomeDNA replication and repair protein RecF1e-49197
NC_010611:3879190:3027302741091083Acinetobacter baumannii ACICU, complete genomeRecombinational DNA repair ATPase (RecF pathway)1e-1274.7
NC_013093:1:4728472858431116Actinosynnema mirum DSM 43827, complete genomeDNA replication and repair protein RecF4e-57222
NC_009922:1:3236323643331098Alkaliphilus oremlandii OhILAs, complete genomeDNA replication and repair protein RecF5e-36152
NC_017186:3694:4592459257461155Amycolatopsis mediterranei S699 chromosome, complete genomerecombination protein F5e-52205
NC_014318:3691:4592459257461155Amycolatopsis mediterranei U32 chromosome, complete genomeDNA replication and repair protein RecF5e-52205
NC_015564:4727630:3572357247651194Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeDNA replication and repair protein recF4e-58225
NC_013171:1:3184318442631080Anaerococcus prevotii DSM 20548, complete genomeDNA replication and repair protein RecF3e-1893.2
NC_007797:1451804:1468308146830814694231116Anaplasma phagocytophilum HZ, complete genomeputative DNA replication and repair protein RecF7e-0858.5
NC_011567:1:3339333944781140Anoxybacillus flavithermus WK1, complete genomeRecombinational DNA repair ATPase RecF3e-43176
NC_014218:4424:3195319544271233Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeDNA replication and repair protein RecF6e-53208
NC_014550:3839389:3442344246051164Arthrobacter arilaitensis Re117, complete genomeDNA replication and repair protein RecF1e-54213
NC_008711:4579997:4132413253311200Arthrobacter aurescens TC1, complete genomeputative DNA replication and repair protein RecF3e-52206
NC_011886:4376261:4290429054981209Arthrobacter chlorophenolicus A6, complete genomeDNA replication and repair protein RecF4e-57222
NC_015145:4232283:4506450657171212Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeDNA replication and repair protein RecF1e-53210
NC_008541:4679022:4061406152661206Arthrobacter sp. FB24 chromosome 1, complete sequenceDNA replication and repair protein RecF2e-53210
NC_012560:5338707:2688268837851098Azotobacter vinelandii DJ, complete genomeDNA replication and repair protein ,RecF1e-1894.7
NC_014171:1:3300330044271128Bacillus thuringiensis BMB171 chromosome, complete genomerecombination protein F3e-44179
NC_017208:1:3300330044271128Bacillus thuringiensis serovar chinensis CT-43 chromosome, completerecombination protein F1e-44181
NC_014098:3372000:3292329244041113Bacillus tusciae DSM 2912 chromosome, complete genomeDNA replication and repair protein RecF3e-40166
NC_010816:1660066:1662804166280416639911188Bifidobacterium longum DJO10A, complete genomeRecombinational DNA repair ATPase0803
NC_015052:2383865:3391339146291239Bifidobacterium longum subsp. infantis 157F, complete genomerecombination protein RecF0803
NC_014656:1634397:1637135163713516383731239Bifidobacterium longum subsp. longum BBMN68 chromosome, completerecf0803
NC_015067:2371428:3442344246291188Bifidobacterium longum subsp. longum JCM 1217, complete genomerecombination protein RecF0803
NC_017221:2268276:2268743226874322699811239Bifidobacterium longum subsp. longum KACC 91563 chromosome,recombination protein RecF0803
NC_014150:1099507:1104826110482611058931068Brachyspira murdochii DSM 12563 chromosome, complete genomeDNA replication and repair protein RecF5e-26119
NC_014392:2513529:5071507161321062Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeDNA replication and repair protein RecF1e-1584.3
NC_012985:465354:4962314962314973581128Candidatus Liberibacter asiaticus str. psy62, complete genomerecombination protein F7e-0962
NC_015846:1065692:1064602106460210657051104Capnocytophaga canimorsus Cc5 chromosome, complete genomeDNA replication and repair protein recF1e-32140
NC_014151:4106624:4593459357891197Cellulomonas flavigena DSM 20109 chromosome, complete genomeDNA replication and repair protein RecF6e-50198
NC_002932:2142000:2153826215382621549321107Chlorobium tepidum TLS, complete genomerecombination/replication protein RecF2e-27123
NC_013895:66641:9426494264954121149Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeputative recombination protein F2e-39163
NC_003030:1:3447344745381092Clostridium acetobutylicum ATCC 824, complete genomerecombination protein F2e-39163
NC_015687:1:3447344745381092Clostridium acetobutylicum DSM 1731 chromosome, complete genomerecombination protein F2e-39163
NC_018664:1:3163316342841122Clostridium acidurici 9a chromosome, complete genomeDNA replication and repair protein RecF7e-38158
NC_009697:1:3007300741011095Clostridium botulinum A str. ATCC 19397 chromosome, completerecombination protein F1e-33144
NC_009495:1:2998299841011104Clostridium botulinum A str. ATCC 3502 chromosome, complete genomerecombination protein F1e-33144
NC_009698:1:3007300741011095Clostridium botulinum A str. Hall chromosome, complete genomerecombination protein F1e-33144
NC_012563:1:3164316442581095Clostridium botulinum A2 str. Kyoto, complete genomeDNA replication and repair protein RecF1e-33144
NC_010520:1:3012301241061095Clostridium botulinum A3 str. Loch Maree, complete genomeDNA replication and repair protein RecF1e-33144
NC_010674:1:3223322343081086Clostridium botulinum B str. Eklund 17B, complete genomeDNA replication and repair protein RecF3e-29129
NC_010516:1:3035303541291095Clostridium botulinum B1 str. Okra, complete genomeDNA replication and repair protein RecF1e-33144
NC_012658:1:3171317142651095Clostridium botulinum Ba4 str. 657 chromosome, complete genomerecombination protein F1e-34147
NC_015425:2752482:2768847276884727699291083Clostridium botulinum BKT015925 chromosome, complete genomeDNA replication and repair protein RecF7e-34145
NC_010723:1:3175317542601086Clostridium botulinum E3 str. Alaska E43, complete genomeDNA replication and repair protein RecF2e-28127
NC_017297:1:3008300841021095Clostridium botulinum F str. 230613 chromosome, complete genomeDNA replication and repair protein RecF2e-33143
NC_009699:1:3008300841021095Clostridium botulinum F str. Langeland chromosome, complete genomerecombination protein F2e-33143
NC_014393:1:3443344345371095Clostridium cellulovorans 743B chromosome, complete genomeDNA replication and repair protein RecF3e-33143
NC_009089:1:3029302941441116Clostridium difficile 630, complete genomeDNA replication and repair protein4e-28125
NC_009706:1:3033303341271095Clostridium kluyveri DSM 555 chromosome, complete genomerecombination protein F4e-36152
NC_011837:1:3024302441271104Clostridium kluyveri NBRC 12016, complete genomerecombination protein F4e-36152
NC_015275:1:3052305241341083Clostridium lentocellum DSM 5427 chromosome, complete genomeDNA replication and repair protein RecF2e-32140
NC_014328:1:3117311742171101Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative DNA replication and repair protein RecF5e-33142
NC_008593:2527064:2543402254340225444871086Clostridium novyi NT, complete genomerecF protein3e-35149
NC_021182:1:3446344645461101Clostridium pasteurianum BC1, complete genomerecF protein5e-31135
NC_008261:1:3567356746521086Clostridium perfringens ATCC 13124, complete genomeDNA replication and repair protein RecF2e-35150
NC_008262:1:3391339144761086Clostridium perfringens SM101, complete genomeDNA replication and repair protein RecF2e-35150
NC_003366:1:3566356646511086Clostridium perfringens str. 13, complete genomerecombination protein F2e-35150
NC_010001:1:3870387049521083Clostridium phytofermentans ISDg, complete genomeDNA replication and repair protein RecF8e-36151
NC_020291:1:3133313342151083Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA replication and repair protein RecF1e-28127
NC_004557:32094:4842548425495371113Clostridium tetani E88, complete genomerecombination protein F1e-32141
NC_015389:2101841:4395439555221128Coriobacterium glomerans PW2 chromosome, complete genomeDNA replication and repair protein RecF5e-36152
NC_007164:2446879:3596359648731278Corynebacterium jeikeium K411, complete genomeDNA replication and repair protein RecF1e-51204
NC_015673:1:3542354249721431Corynebacterium resistens DSM 45100 chromosome, complete genomeDNA replication and repair protein3e-46186
NC_020260:3931567:3931567393156739326401074Cronobacter sakazakii Sp291, complete genomerecombination protein F3e-1583.2
NC_013170:1:2977297741131137Cryptobacterium curtum DSM 15641, complete genomerecF protein3e-27122
NC_015565:2879603:2945294540481104Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDNA replication and repair protein recF4e-36152
NC_021184:1:3375337544751101Desulfotomaculum gibsoniae DSM 7213, complete genomerecF protein6e-27122
NC_014836:2919508:2792279238231032Desulfurispirillum indicum S5 chromosome, complete genomeDNA replication and repair protein RecF5e-1789.4
NC_011297:1357947:1376151137615113772301080Dictyoglomus thermophilum H-6-12, complete genomeDNA replication and repair protein RecF2e-1997.4
NC_011661:1542335:1560523156052315616021080Dictyoglomus turgidum DSM 6724, complete genomeDNA replication and repair protein RecF7e-1995.5
NC_009952:3522370:3547348354734835484331086Dinoroseobacter shibae DFL 12, complete genomeDNA replication and repair protein RecF8e-0858.5
NC_013204:3613824:4350435056121263Eggerthella lenta DSM 2243, complete genomeDNA replication and repair protein RecF2e-25117
NC_012778:2997:2997299740881092Eubacterium eligens ATCC 27750, complete genomeDNA replication and repair protein RecF9e-32138
NC_012781:4065:2984298440721089Eubacterium rectale ATCC 33656, complete genomeDNA replication and repair protein RecF5e-34145
NC_018665:1:3495349546491155Exiguobacterium antarcticum B7 chromosome, complete genomeDNA replication and repair protein recF1e-45184
NC_012673:1679744:1696312169631216974301119Exiguobacterium sp. AT1b, complete genomeDNA replication and repair protein RecF1e-42174
NC_010814:4099:2996299641021107Geobacter lovleyi SZ, complete genomeDNA replication and repair protein RecF2e-33143
NC_011979:4293859:2952295240461095Geobacter sp. FRC-32, complete genomeDNA replication and repair protein RecF8e-37154
NC_014654:1:3111311142321122Halanaerobium sp. 'sapolanicus' chromosome, complete genomeDNA replication and repair protein RecF2e-31136
NC_014830:4012999:5015501562891275Intrasporangium calvum DSM 43043 chromosome, complete genomeDNA replication and repair protein RecF2e-45183
NC_007929:1805000:3309330944481140Lactobacillus salivarius subsp. salivarius UCC118, complete genomeDNA replication and repair protein3e-37156
NC_006087:1:4160416053171158Leifsonia xyli subsp. xyli str. CTCB07, complete genomerecombination protein F1e-50200
NC_019907:46994:6656866568677011134Liberibacter crescens BT-1 chromosome, complete genomeDNA recombination and repair protein RecF9e-1271.6
NC_008576:4701930:2711271138591149Magnetococcus sp. MC-1, complete genomeDNA replication and repair protein RecF6e-1685.5
NC_011757:5742290:4428442855851158Methylobacterium chloromethanicum CM4, complete genomeDNA replication and repair protein RecF1e-1274.3
NC_010172:5447189:3032303241861155Methylobacterium extorquens PA1, complete genomeDNA replication and repair protein RecF1e-1274.3
NC_015572:1:2684268437571074Methylomonas methanica MC09 chromosome, complete genomeDNA replication and repair protein recF1e-1171.6
NC_012803:3691:3691369149051215Micrococcus luteus NCTC 2665, complete genomeDNA replication and repair protein RecF8e-51201
NC_007644:3229:3229322943411113Moorella thermoacetica ATCC 39073, complete genomeDNA replication and repair protein RecF1e-38160
NC_011896:3252925:3281328144381158Mycobacterium leprae Br4923, complete genomeputative DNA replication and SOS induction protein4e-49196
NC_011896:1:3281328144381158Mycobacterium leprae Br4923, complete genomeputative DNA replication and SOS induction protein4e-49196
NC_002677:1:3281328144381158Mycobacterium leprae TN, complete genomerecombination protein F4e-49196
NC_002677:3253057:3281328144381158Mycobacterium leprae TN, complete genomerecombination protein F4e-49196
NC_010718:1:3167316743271161Natranaerobius thermophilus JW/NM-WN-LF, complete genomeDNA replication and repair protein RecF1e-36154
NC_014315:3319865:95019501105891089Nitrosococcus watsoni C-113 chromosome, complete genomeDNA replication and repair protein RecF3e-1170.1
NC_014210:5752651:5627562767601134Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,DNA replication and repair protein RecF7e-53208
NC_014761:1981435:1996460199646019974941035Oceanithermus profundus DSM 14977 chromosome, complete genomeDNA replication and repair protein recf3e-24113
NC_014363:2035141:2043220204322020443081089Olsenella uli DSM 7084 chromosome, complete genomeDNA replication and repair protein RecF2e-33143
NC_015690:8645500:2964296440701107Paenibacillus mucilaginosus KNP414 chromosome, complete genomeRecF2e-45183
NC_007498:3655304:2856285639471092Pelobacter carbinolicus DSM 2380, complete genomeDNA replication and repair protein2e-22107
NC_011060:3000067:2883288339921110Pelodictyon phaeoclathratiforme BU-1, complete genomeDNA replication and repair protein RecF1e-27124
NC_015501:1669521:1685231168523116863461116Porphyromonas asaccharolytica DSM 20707 chromosome, completeDNA replication and repair protein recF6e-26119
NC_008817:1538507:154529715452971546274978Prochlorococcus marinus str. MIT 9515, complete genomeputative DNA repair and genetic recombination protein RecF5e-26119
NC_006085:2544421:4227422754111185Propionibacterium acnes KPA171202, complete genomerecombination protein F1e-47191
NC_014039:2479500:4202420254071206Propionibacterium acnes SK137 chromosome, complete genomeDNA recombination and repair protein RecF1e-47190
NC_011059:1:2893289340051113Prosthecochloris aestuarii DSM 271, complete genomeDNA replication and repair protein RecF8e-32138
NC_002516:6255854:3169316942781110Pseudomonas aeruginosa PAO1, complete genomerecombination protein F4e-1686.3
NC_020829:1:2679267937881110Pseudomonas denitrificans ATCC 13867, complete genomerecombination protein F3e-1686.7
NC_020209:4768500:4771601477160147727041104Pseudomonas poae RE*1-1-14, complete genomerecombination protein F5e-1892.4
NC_009512:1:3062306241651104Pseudomonas putida F1, complete genomeDNA replication and repair protein RecF1e-1894.7
NC_010322:1:3844384449471104Pseudomonas putida GB-1 chromosome, complete genomerecombination protein F9e-1995.1
NC_002947:8394:1222212222133251104Pseudomonas putida KT2440, complete genomerecombination protein F1e-1894.4
NC_010501:1:3081308141841104Pseudomonas putida W619, complete genomeDNA replication and repair protein RecF1e-1790.9
NC_015312:1:4026402651681143Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeDNA replication and repair protein recF2e-51202
NC_015703:6295500:6314430631443063155301101Runella slithyformis DSM 19594 chromosome, complete genomeDNA replication and repair protein recF1e-1480.9
NC_007677:71532:7153271532727701239Salinibacter ruber DSM 13855, complete genomeDNA replication and repair protein RecF3e-32139
NC_014032:71724:7172471724729621239Salinibacter ruber M8 chromosome, complete genomeDNA replication and repair protein RecF5e-32139
NC_013521:4240468:4478447857221245Sanguibacter keddieii DSM 10542, complete genomeDNA replication and repair protein RecF4e-51202
NC_009092:4585784:2684268437661083Shewanella loihica PV-4, complete genomeDNA replication and repair protein RecF6e-1995.5
NC_004337:3590323:3871536387153638726091074Shigella flexneri 2a str. 301, complete genomerecombination protein F5e-1892.4
NC_013165:3146000:2840284039701131Slackia heliotrinireducens DSM 20476, complete genomerecF protein9e-25114
NC_014006:850763:9037189037189047881071Sphingobium japonicum UT26S chromosome 1, complete genomeDNA replication and repair protein RecF5e-0652.8
NC_015436:1:2895289539741080Spirochaeta coccoides DSM 17374 chromosome, complete genomeDNA replication and repair protein recF9e-27121
NC_004461:1:3822382249371116Staphylococcus epidermidis ATCC 12228, complete genomerecombination protein F2e-43176
NC_007350:1:4036403651511116Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,DNA repair and genetic recombination protein8e-42171
NC_014623:723089:7230897230897245341446Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeDNA replication and repair protein RecF3e-1893.2
NC_015433:1998427:2013306201330620144001095Streptococcus suis ST3 chromosome, complete genomeDNA replication and repair protein RecF3e-29129
NC_003888:4251867:4266442426644242675631122Streptomyces coelicolor A3(2), complete genomerecombination protein F1e-58227
NC_013929:5135285:5135285513528551364091125Streptomyces scabiei 87.22 chromosome, complete genomeDNA replication protein3e-57222
NC_015953:3684065:3687060368706036881901131Streptomyces sp. SirexAA-E chromosome, complete genomeDNA replication and repair protein RecF3e-57222
NC_018750:3964784:3967638396763839687591122Streptomyces venezuelae ATCC 10712, complete genomeDNA recombination and repair protein RecF2e-57223
NC_013595:10329633:5885588570571173Streptosporangium roseum DSM 43021, complete genomeRecombinational DNA repair ATPase (RecF pathway)- like protein8e-48191
NC_006177:3549467:2948294840751128Symbiobacterium thermophilum IAM 14863, complete genomeDNA repair and genetic recombination protein3e-36152
NC_014220:2398334:2716271638221107Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeDNA replication and repair protein RecF4e-35149
NC_015519:2739347:3080308041741095Tepidanaerobacter sp. Re1 chromosome, complete genomeDNA replication and repair protein recF4e-26119
NC_014152:1:3018301841241107Thermincola sp. JR, complete genomeDNA replication and repair protein RecF8e-35148
NC_007333:3626510:4988498861211134Thermobifida fusca YX, complete genomerecombination protein F2e-56220
NC_007333:1:4988498861211134Thermobifida fusca YX, complete genomerecombination protein F2e-56220
NC_013510:1:5315531564541140Thermomonospora curvata DSM 43183, complete genomeDNA replication and repair protein RecF6e-49194
NC_017278:258921:2839422839422849731032Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein2e-1170.5
NC_017268:1:2761276138341074Treponema pallidum subsp. pallidum str. Chicago chromosome,DNA replication and repair protein RecF6e-1892
NC_016843:1:2701270138341134Treponema pallidum subsp. pertenue str. Gauthier chromosome,recombination protein F6e-1892
NC_016842:1:2701270138341134Treponema pallidum subsp. pertenue str. SamoaD chromosome, completerecombination protein F6e-1892
NC_015714:1:2702270238351134Treponema paraluiscuniculi Cuniculi A chromosome, complete genomerecombination protein F3e-1893.2
NC_014221:169996:1925671925671936251059Truepera radiovictrix DSM 17093 chromosome, complete genomeDNA replication and repair protein RecF1e-28127
NC_002488:2657274:3161316142551095Xylella fastidiosa 9a5c, complete genomerecombination protein F3e-1789.7
NC_002488:1:3161316142551095Xylella fastidiosa 9a5c, complete genomerecombination protein F3e-1789.7
NC_010577:2513241:3044304441381095Xylella fastidiosa M23, complete genomeDNA replication and repair protein RecF1e-1894.4
NC_010577:1:3044304441381095Xylella fastidiosa M23, complete genomeDNA replication and repair protein RecF1e-1894.4
NC_004556:1:3153315342471095Xylella fastidiosa Temecula1, complete genomerecombination protein F1e-1894.4
NC_015709:1769806:1769806176980617709511146Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeDNA replication and repair protein RecF6e-1272.4