Pre_GI: BLASTN Hits

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Query: NC_004578:20738 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 20738, End: 69606, Length: 48869

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004578:59167115916711594513828428Pseudomonas syringae pv. tomato str. DC3000, complete genome04092BLASTN svgBLASTP svg
NC_004578:60899586089958612236632409Pseudomonas syringae pv. tomato str. DC3000, complete genome04090BLASTN svgBLASTP svg
NC_004578:49400004940000496327423275Pseudomonas syringae pv. tomato str. DC3000, complete genome04090BLASTN svgBLASTP svg
NC_004578:35970833597083362009923017Pseudomonas syringae pv. tomato str. DC3000, complete genome04090BLASTN svgBLASTP svg
NC_004578:5336773*5336773541660879836Pseudomonas syringae pv. tomato str. DC3000, complete genome04088BLASTN svgBLASTP svg
NC_004578:26715082671508269955228045Pseudomonas syringae pv. tomato str. DC3000, complete genome04088BLASTN svgBLASTP svg
NC_004578:21246821246824209929632Pseudomonas syringae pv. tomato str. DC3000, complete genome04088BLASTN svgBLASTP svg
NC_004578:1190000*1190000121945029451Pseudomonas syringae pv. tomato str. DC3000, complete genome04088BLASTN svgBLASTP svg
NC_004578:4499143*4499143452348624344Pseudomonas syringae pv. tomato str. DC3000, complete genome04086BLASTN svgBLASTP svg
NC_004578:61386696138669616309624428Pseudomonas syringae pv. tomato str. DC3000, complete genome04086BLASTN svgBLASTP svg
NC_004578:47813264781326481642335098Pseudomonas syringae pv. tomato str. DC3000, complete genome04084BLASTN svgBLASTP svg
NC_004578:40613724061372409399732626Pseudomonas syringae pv. tomato str. DC3000, complete genome04078BLASTN svgBLASTP svg
NC_004578:25604732560473258881228340Pseudomonas syringae pv. tomato str. DC3000, complete genome03897BLASTN svgBLASTP svg
NC_004632:28470284705186423395Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,03891BLASTN svgBLASTP svg
NC_004578:93486793486796406929203Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:895019*89501992169226674Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:63347356334735636397929245Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:38498353849835387260722773Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:51921105192110522245930350Pseudomonas syringae pv. tomato str. DC3000, complete genome03796BLASTN svgBLASTP svg
NC_005773:106000*10600015088044881Pseudomonas syringae pv. phaseolicola 1448A, complete genome01475BLASTN svgBLASTP svg
NC_004578:32416183241618326508823471Pseudomonas syringae pv. tomato str. DC3000, complete genome01376BLASTN svgBLASTP svg
NC_005773:20800020800023117523176Pseudomonas syringae pv. phaseolicola 1448A, complete genome01197BLASTN svgBLASTP svg
NC_005773:5149768*5149768521141661649Pseudomonas syringae pv. phaseolicola 1448A, complete genome0827BLASTN svgBLASTP svg
NC_004578:4465247*4465247448346018214Pseudomonas syringae pv. tomato str. DC3000, complete genome0745BLASTN svgBLASTP svg
NC_015733:1555476*1555476160259947124Pseudomonas putida S16 chromosome, complete genome0702BLASTN svgBLASTP svg
NC_015733:11799771179977119809918123Pseudomonas putida S16 chromosome, complete genome0702BLASTN svgBLASTP svg
NC_002947:737924*73792476633928416Pseudomonas putida KT2440, complete genome0702BLASTN svgBLASTP svg
NC_002947:53864895386489541416727679Pseudomonas putida KT2440, complete genome0702BLASTN svgBLASTP svg
NC_002947:46045824604582462867624095Pseudomonas putida KT2440, complete genome0694BLASTN svgBLASTP svg
NC_005773:11353741135374117481539442Pseudomonas syringae pv. phaseolicola 1448A, complete genome9e-153549BLASTN svgBLASTP svg
NC_020209:4768500*4768500481226743768Pseudomonas poae RE*1-1-14, complete genome7e-132480BLASTN svgBLASTP svg
NC_012660:57932005793200583260939410Pseudomonas fluorescens SBW25 chromosome, complete genome1e-117432BLASTN svgBLASTP svg
NC_005773:4282840*4282840431412131282Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-116428BLASTN svgBLASTP svg
NC_007274:72979729799468121703Pseudomonas syringae pv. phaseolicola 1448A large plasmid, complete2e-83319BLASTN svgBLASTP svg
NC_020209:1847895*1847895187267824784Pseudomonas poae RE*1-1-14, complete genome7e-61244BLASTN svgBLASTP svg
NC_014153:30843563084356310630321948Thiomonas intermedia K12 chromosome, complete genome3e-57232BLASTN svgBLASTP svg
NC_002947:4484824*4484824451609931276Pseudomonas putida KT2440, complete genome1e-47200BLASTN svgBLASTP svg
NC_007005:5500196*5500196552713626941Pseudomonas syringae pv. syringae B728a, complete genome2e-42182BLASTN svgBLASTP svg
NC_007651:3560652*3560652359749336842Burkholderia thailandensis E264 chromosome I, complete sequence3e-35159BLASTN svgBLASTP svg
NC_005773:4028500*4028500405209923600Pseudomonas syringae pv. phaseolicola 1448A, complete genome8e-33151BLASTN svgBLASTP svg
NC_014844:442380*44238048618443805Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome5e-31145BLASTN svgBLASTP svg
NC_008463:31688373168837319814929313Pseudomonas aeruginosa UCBPP-PA14, complete genome2e-30143BLASTN svgBLASTP svg
NC_002947:59610965961096598439523300Pseudomonas putida KT2440, complete genome1e-25127BLASTN svgBLASTP svg
NC_020209:45495634549563457659927037Pseudomonas poae RE*1-1-14, complete genome5e-25125BLASTN svgBLASTP svg
NC_008095:21179522117952213765319702Myxococcus xanthus DK 1622, complete genome1e-22117BLASTN svgBLASTP svg
NC_009439:1174432*1174432119973625305Pseudomonas mendocina ymp, complete genome1e-22117BLASTN svgBLASTP svg
NC_009439:12978511297851133481436964Pseudomonas mendocina ymp, complete genome1e-22117BLASTN svgBLASTP svg
NC_009439:20545205454442723883Pseudomonas mendocina ymp, complete genome1e-22117BLASTN svgBLASTP svg
NC_009439:3394174*3394174341925525082Pseudomonas mendocina ymp, complete genome1e-22117BLASTN svgBLASTP svg
NC_009439:44289044289048900846119Pseudomonas mendocina ymp, complete genome1e-22117BLASTN svgBLASTP svg
NC_020209:997385*997385104138844004Pseudomonas poae RE*1-1-14, complete genome7e-21111BLASTN svgBLASTP svg
NC_004578:48696734869673488861018938Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_005773:48992524899252493544536194Pseudomonas syringae pv. phaseolicola 1448A, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_008463:53135275313527535528941763Pseudomonas aeruginosa UCBPP-PA14, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_010501:26095672609567264709937533Pseudomonas putida W619, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_004578:44329834432983445709924117Pseudomonas syringae pv. tomato str. DC3000, complete genome4e-1385.7BLASTN svgBLASTP svg
NC_012560:36986973698697372152322827Azotobacter vinelandii DJ, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_012560:5019900*5019900505162031721Azotobacter vinelandii DJ, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_012560:898416*89841692558327168Azotobacter vinelandii DJ, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_021150:36986963698696372152222827Azotobacter vinelandii CA6, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_021150:5019887*5019887505160731721Azotobacter vinelandii CA6, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_021150:898428*89842892559527168Azotobacter vinelandii CA6, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_008341:29038290385221923182Nitrosomonas eutropha C91 plasmid1, complete sequence6e-1281.8BLASTN svgBLASTP svg
NC_015379:2417312*2417312246459947288Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-1179.8BLASTN svgBLASTP svg
NC_012660:2045398*2045398210849663099Pseudomonas fluorescens SBW25 chromosome, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_011958:976500976500101879142292Rhodobacter sphaeroides KD131 chromosome 2, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_008609:25160825160828892937322Pelobacter propionicus DSM 2379, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_005773:26417152641715266373322019Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008686:50750*507507732426575Paracoccus denitrificans PD1222 chromosome 1, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_015222:1905194*1905194192907923886Nitrosomonas sp. AL212 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015222:31371673137167315861921453Nitrosomonas sp. AL212 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_020209:19865031986503202425537753Pseudomonas poae RE*1-1-14, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014168:1724993*1724993175913834146Segniliparus rotundus DSM 44985 chromosome, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome6e-0661.9BLASTN svgBLASTP svg