Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:5192110 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
51921105192583474type III chaperone ShcS1QuickGO ontology
51927825193135354lipoprotein putativeQuickGO ontology
51932125193709498transcription elongation factor GreBQuickGO ontologyBLASTP
519376251954531692ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
519560151968661266site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
519686351984581596site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
519845552006922238hypothetical proteinBLASTP
52006955201093399hypothetical proteinBLASTP
520152352039822460hypothetical proteinBLASTP
52043495205311963site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
52052855205530246hypothetical protein
52060265206406381hypothetical proteinBLASTP
520673752077771041hypothetical proteinBLASTP
52078875208783897transcriptional regulator LysR familyQuickGO ontologyBLASTP
520890152100701170C4-dicarboxylate transportermalic acid transport proteinQuickGO ontologyBLASTP
52100795210681603hypothetical proteinBLASTP
52106815211226546inorganic pyrophosphataseQuickGO ontologyBLASTP
521134252126251284enolaseQuickGO ontologyBLASTP
52126675212909243hypothetical protein
52134445213767324hypothetical proteinBLASTP
521421052155681359voltage-gated chloride channel family proteinQuickGO ontologyBLASTP
52158055216128324hypothetical proteinBLASTP
52161395216882744transporter putativeQuickGO ontologyBLASTP
52169745217408435transcriptional regulator MerR familyQuickGO ontologyBLASTP
52182475218624378hypothetical proteinBLASTP
521875052203691620methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
522063152216531023ISPsy4 transposaseQuickGO ontologyBLASTP
52216505222459810transposaseIS proteinQuickGO ontologyBLASTP