Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:1190000 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11900001190890891integraserecombinase XerD putativeQuickGO ontologyBLASTP
11909651191342378hypothetical proteinBLASTP
119153911932691731type I restriction-modification system M subunitQuickGO ontologyBLASTP
119325911945271269type I restriction-modification system S subunitQuickGO ontologyBLASTP
119452411955761053hypothetical proteinBLASTP
119557311986953123type I restriction-modification enzyme R subunit putativeQuickGO ontologyBLASTP
11988811199858978hypothetical proteinBLASTP
11998581200274417hypothetical proteinBLASTP
12011921201506315mobilization protein MobBQuickGO ontologyBLASTP
120150912039262418relaxasemobilization nuclease domain proteinQuickGO ontologyBLASTP
12039371204314378hypothetical proteinBLASTP
120505712060791023ISPsy4 transposaseQuickGO ontologyBLASTP
12060761206885810transposaseIS proteinQuickGO ontologyBLASTP
120712912096572529hypothetical proteinBLASTP
121124912128021554ISPsy5 transposaseQuickGO ontologyBLASTP
12128201213179360ISPsy5 Orf1QuickGO ontologyBLASTP
121448612156731188site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
121588912169891101GTP-binding protein YchFQuickGO ontologyBLASTP
12170111217595585peptidyl-tRNA hydrolaseQuickGO ontologyBLASTP
1217760121837161250S ribosomal protein L25QuickGO ontologyBLASTP
12185091219450942ribose-phosphate pyrophosphokinaseQuickGO ontologyBLASTP