Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:5916711 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
59167115917607897dioxygenase TauDTfdA familyQuickGO ontologyBLASTP
59177975917961165hypothetical protein
591796359209232961autotransporter putativeQuickGO ontologyBLASTP
59210915921993903hypothetical proteinBLASTP
59221825923180999hypothetical proteinBLASTP
592317759242561080hypothetical proteinBLASTP
592425359262772025EF hand domain proteinQuickGO ontologyBLASTP
59268265927059234hypothetical proteinBLASTP
59271295928061933EF hand domain proteinQuickGO ontologyBLASTP
59280715928466396hypothetical proteinBLASTP
59286345928801168hypothetical proteinBLASTP
592879859299761179hypothetical proteinBLASTP
59310875932019933EF hand domain proteinQuickGO ontologyBLASTP
59320295932424396hypothetical proteinBLASTP
593284859344011554ISPsy5 transposaseQuickGO ontologyBLASTP
59344195934778360ISPsy5 Orf1QuickGO ontologyBLASTP
59361005936459360ISPsy5 Orf1QuickGO ontologyBLASTP
593647759380301554ISPsy5 transposaseQuickGO ontologyBLASTP
59381155938897783lipoprotein NLPA familyQuickGO ontologyBLASTP
59390685940018951sigma-54-binding proteinQuickGO ontologyBLASTP
59401015940682582hypothetical proteinBLASTP
594089859422081311MFS transporter phthalate permease familyQuickGO ontologyBLASTP
59428135943805993transcriptional regulator AraC familyQuickGO ontologyBLASTP
5943909594513812302-octaprenyl-3-methyl-6-methoxy-14-benzoquinol hydroxylaseQuickGO ontologyBLASTP