Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:212468 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2124682135111044nitrilase putativeQuickGO ontologyBLASTP
2158072173631557recombinase putativeQuickGO ontologyBLASTP
217450218259810transposaseIS proteinQuickGO ontologyBLASTP
2182562192781023ISPsy4 transposaseQuickGO ontologyBLASTP
2195542211071554ISPsy5 transposaseQuickGO ontologyBLASTP
221125221484360ISPsy5 Orf1QuickGO ontologyBLASTP
2225282237451218hypothetical proteinBLASTP
224484225383900hypothetical proteinBLASTP
2253862265491164hypothetical proteinBLASTP
2265542276721119cysteine synthaseQuickGO ontologyBLASTP
231080232075996hypothetical proteinBLASTP
232469232945477hypothetical proteinBLASTP
233476234099624hypothetical proteinBLASTP
2342872355251239diaminopimelate decarboxylaseQuickGO ontologyBLASTP
235527236402876hypothetical proteinBLASTP
2364022376851284L-lysine 6-monooxygenaseQuickGO ontologyBLASTP
237840238775936transcriptional activator LysRQuickGO ontologyBLASTP
239026239304279proteic killer protein putativeQuickGO ontologyBLASTP
239314239619306virulence-associated protein putativeQuickGO ontologyBLASTP
239653239934282hypothetical proteinBLASTP
240015240155141hypothetical protein
240354240692339nitrogen regulatory protein P-IIQuickGO ontologyBLASTP
2407282420651338ammonium transporterQuickGO ontologyBLASTP