Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:1174432 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11744321174884453molybdopterin synthase subunit MoaEQuickGO ontologyBLASTP
11750421175206165hypothetical protein
117538011772961917metallophosphoesteraseQuickGO ontologyBLASTP
11775871178498912hypothetical proteinBLASTP
11786001179178579hypothetical proteinBLASTP
11791871179633447hypothetical protein
11796601179824165hypothetical protein
11798461180316471hypothetical proteinBLASTP
11803131180540228hypothetical proteinBLASTP
11809351181354420PilT domain-containing proteinQuickGO ontologyBLASTP
11813511181596246hypothetical proteinBLASTP
118308911867393651signal transduction proteinQuickGO ontologyBLASTP
11872391187598360IS66 Orf2 family proteinQuickGO ontologyBLASTP
118761811891801563transposase IS66QuickGO ontologyBLASTP
11891941189757564hypothetical proteinBLASTP
118998011910801101translation-associated GTPaseQuickGO ontologyBLASTP
11911061191696591peptidyl-tRNA hydrolaseQuickGO ontologyBLASTP
1191760119236560650S ribosomal protein L25general stress protein CtcQuickGO ontologyBLASTP
11924711193403933ribose-phosphate pyrophosphokinaseQuickGO ontologyBLASTP
119369011945658764-diphosphocytidyl-2-C-methyl-D-erythritol kinaseQuickGO ontologyBLASTP
11948261195440615outer membrane lipoprotein LolBQuickGO ontologyBLASTP
119544011971671728TPR repeat-containing proteinQuickGO ontologyBLASTP
119737711986571281glutamyl-tRNA reductaseQuickGO ontologyBLASTP
119865411997361083peptide chain release factor 1QuickGO ontologyBLASTP