Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:3394174 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
339303533941771143succinyl-diaminopimelate desuccinylaseQuickGO ontologyBLASTP
33941743394986813rRNA guanine-N1--methyltransferaseQuickGO ontologyBLASTP
33949923395363372hypothetical proteinBLASTP
33955803395789210cold-shock DNA-binding protein family proteinQuickGO ontologyBLASTP
339608533971491065hypothetical proteinBLASTP
339724133990731833ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like proteinQuickGO ontologyBLASTP
33990833399814732hypothetical proteinBLASTP
33998113400734924ABC transporter relatedQuickGO ontologyBLASTP
34008343401154321hypothetical proteinBLASTP
34011233401821699integron integraseQuickGO ontologyBLASTP
34023543402833480GCN5-related N-acetyltransferaseQuickGO ontologyBLASTP
34033693403683315hypothetical proteinBLASTP
34037613404114354hypothetical protein
340448634057871302transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
34057883406264477hypothetical protein
34063553406804450hypothetical proteinBLASTP
34073213407632312hypothetical protein
34083183408797480hypothetical protein
340882834103901563transposase IS66QuickGO ontologyBLASTP
34104103410769360IS66 Orf2 family proteinQuickGO ontologyBLASTP
34108383411218381hypothetical protein
34112783411805528gentamicin 3-N-acetyltransferaseQuickGO ontologyBLASTP
34118863412278393hypothetical proteinBLASTP
34124323413274843hypothetical proteinBLASTP
34134333413816384hypothetical protein
341400034164832484glycerol-3-phosphate acyltransferaseQuickGO ontologyBLASTP
34166923417405714hypothetical proteinBLASTP
341757034192551686malatequinone oxidoreductaseQuickGO ontologyBLASTP