Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:6089958 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
60899586090731774amino acid ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
60907466091510765amino acid ABC transporter periplasmic amino acid-binding proteinQuickGO ontologyBLASTP
60915776092272696amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
60922696092958690amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
609296060942311272hypothetical proteinBLASTP
60945276094841315hypothetical proteinBLASTP
609536960963821014DnaJ domain proteinQuickGO ontologyBLASTP
60967836097085303hypothetical protein
609875860997951038hypothetical proteinBLASTP
61015136101872360ISPsy5 Orf1QuickGO ontologyBLASTP
610189061034431554ISPsy5 transposaseQuickGO ontologyBLASTP
61040516104860810transposaseIS proteinQuickGO ontologyBLASTP
61051246105483360ISPsy5 Orf1QuickGO ontologyBLASTP
610584861069301083hypothetical protein
61076326107955324hypothetical proteinBLASTP
61079526108296345hypothetical proteinBLASTP
61084486109113666transcriptional regulator GntR familyQuickGO ontologyBLASTP
610936961106011233hypothetical proteinBLASTP
61106366111406771hypothetical proteinBLASTP
61114036112209807hypothetical proteinBLASTP
611221961138381620allophanate hydrolase putativeQuickGO ontologyBLASTP
611383561155741740biotin carboxylasebiotin carboxyl carrier proteinQuickGO ontologyBLASTP
61159936116622630acyl carrier protein phosphodiesterase putativeQuickGO ontologyBLASTP
61166796117293615phosphoglycerate mutase family proteinQuickGO ontologyBLASTP
61173716117712342hypothetical proteinBLASTP
61180666118803738hypothetical proteinBLASTP
61188256118932108hypothetical proteinBLASTP
61190306119320291stability cassette protein putativeQuickGO ontologyBLASTP
61193106119549240stability cassette protein putativeQuickGO ontologyBLASTP
61197246120185462acetyltransferase GNAT familyQuickGO ontologyBLASTP
61205226121052531hypothetical proteinBLASTP
612109261223661275outer membrane porin OprD familyQuickGO ontologyBLASTP