Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4061372 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
40613724061992621hypothetical proteinBLASTP
40620654062670606hypothetical proteinBLASTP
40628414063530690DNA-binding heavy metal response regulatorQuickGO ontologyBLASTP
406350940648971389heavy metal sensor histidine kinaseQuickGO ontologyBLASTP
40649164065584669lyase putativeQuickGO ontologyBLASTP
40656324065790159hypothetical protein
40661774066986810transposaseIS proteinQuickGO ontologyBLASTP
406698340680051023ISPsy4 transposaseQuickGO ontologyBLASTP
406808540691071023site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
406910440707831680hypothetical proteinBLASTP
40712374071596360ISPsy5 Orf1QuickGO ontologyBLASTP
407161440731671554ISPsy5 transposaseQuickGO ontologyBLASTP
407434640759471602site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
40771864078172987hypothetical proteinBLASTP
40799624080414453transcriptional regulator MarR familyQuickGO ontologyBLASTP
408043240824982067hypothetical proteinBLASTP
40824954082704210hypothetical proteinBLASTP
40827014083585885HlyD family secretion proteinQuickGO ontologyBLASTP
408358240850151434outer membrane efflux proteinQuickGO ontologyBLASTP
40851694085507339hypothetical proteinBLASTP
40855894085954366hypothetical proteinBLASTP
40859934086826834ion transport protein putativeQuickGO ontologyBLASTP
40869254087923999sulfate ABC transporter periplasmic sulfate-binding proteinQuickGO ontologyBLASTP
40879844088391408lipoprotein putativeQuickGO ontology
40895814090051471cytochrome c-type biogenesis protein CycLQuickGO ontologyBLASTP
40900484090584537thioldisulfide interchange protein DsbEQuickGO ontologyBLASTP
409058140925541974cytochrome c-type biogenesis protein CcmFQuickGO ontologyBLASTP
40925514093024474cytochrome c-type biogenesis protein CcmEQuickGO ontologyBLASTP
40930214093197177heme exporter protein CcmDQuickGO ontologyBLASTP
40931944093997804heme exporter protein CcmCQuickGO ontologyBLASTP