Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4869673 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
48687064869686981integral membrane proteinQuickGO ontologyBLASTP
486967348712651593hypothetical proteinBLASTP
487126248724821221hypothetical protein
48727804873772993hypothetical proteinBLASTP
487376948755891821hypothetical proteinBLASTP
48755944876073480hypothetical proteinBLASTP
48766534876949297hypothetical protein
487694948784571509hypothetical protein
48786414879582942hypothetical proteinBLASTP
48795854879914330hypothetical proteinBLASTP
48798764880313438ISPs1 transposase OrfBQuickGO ontologyBLASTP
48803614880729369ISPs1 transposase OrfAQuickGO ontologyBLASTP
48808334881072240hypothetical proteinBLASTP
48811674881802636type III effector HopE1QuickGO ontology
488208248833651284hypothetical proteinBLASTP
488360348846521050moxR protein putativeQuickGO ontologyBLASTP
488464948859921344hypothetical proteinBLASTP
48860334886392360hypothetical protein
48865814887033453lipoprotein putativeQuickGO ontology
488715948886101452pyruvate kinaseQuickGO ontologyBLASTP