Pre_GI Gene

Some Help

Host: NC_004632 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004632:28470 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
28470304251956relaxasemobilization nuclease MobA putativeQuickGO ontologyBLASTP
3051930728210hypothetical protein
3100331812810transposaseIS proteinQuickGO ontologyBLASTP
31809328311023ISPsy4 transposaseQuickGO ontologyBLASTP
33497346931197hypothetical proteinBLASTP
34735360811347major facilitator family transporterQuickGO ontologyBLASTP
3613736322186hypothetical proteinBLASTP
3633936692354transcriptional regulator PbsX familyQuickGO ontologyBLASTP
3693737470534hypothetical proteinBLASTP
3746037768309hypothetical proteinBLASTP
3778638058273lipoprotein putativeQuickGO ontology
3810038552453pilT protein putativeQuickGO ontologyBLASTP
3858939062474traH protein putativeQuickGO ontologyBLASTP
3905939859801traI proteinQuickGO ontologyBLASTP
39856410371182type IV pilus biogenesis proteinQuickGO ontologyBLASTP
4103841733696hypothetical protein
4177242281510endonucleaseQuickGO ontologyBLASTP
4231842563246hypothetical protein
4259242879288traK proteinQuickGO ontologyBLASTP
42922475954674DNA primase TraCQuickGO ontologyBLASTP
4762147974354traL proteinQuickGO ontologyBLASTP
4800148678678traM proteinQuickGO ontologyBLASTP
48735497931059traN proteinQuickGO ontologyBLASTP
49799511571359traO proteinQuickGO ontologyBLASTP
5115451864711traP proteinQuickGO ontology