Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:442890 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4428904447761887DEADDEAH box helicase domain-containing proteinQuickGO ontologyBLASTP
444964445722759extracellular solute-binding proteinQuickGO ontologyBLASTP
4457754471481374hypothetical proteinBLASTP
447247448011765hypothetical proteinBLASTP
447981448847867hypothetical proteinBLASTP
4490654501111047recA proteinQuickGO ontologyBLASTP
450481451080600transposaseQuickGO ontologyBLASTP
4514324527331302transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
4536064562602655regulatory protein LuxRQuickGO ontologyBLASTP
4563104574671158FAD-dependent pyridine nucleotide-disulphide oxidoreductaseQuickGO ontologyBLASTP
4577514593131563transposase IS66QuickGO ontologyBLASTP
459333459692360IS66 Orf2 family proteinQuickGO ontologyBLASTP
459892460230339IS66 Orf2 family proteinQuickGO ontologyBLASTP
4604244619861563transposase IS66QuickGO ontologyBLASTP
462006462365360IS66 Orf2 family proteinQuickGO ontologyBLASTP
462619463311693OmpW family proteinQuickGO ontologyBLASTP
4634134650561644AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
4656794669801302transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
4682544697051452aldehyde dehydrogenaseQuickGO ontologyBLASTP
469752470285534rubredoxin-type FeCys4 proteinQuickGO ontologyBLASTP
470321470719399rubredoxin-type FeCys4 proteinQuickGO ontologyBLASTP
4709364721411206alkane 1-monooxygenaseQuickGO ontologyBLASTP
472301472402102BLASTP
4723504733661017hypothetical protein
4733594751071749hypothetical proteinBLASTP
4752244764621239hypothetical proteinBLASTP
476509477354846510-methylenetetrahydrofolate reductaseQuickGO ontologyBLASTP
4774454788541410S-adenosyl-L-homocysteine hydrolaseQuickGO ontologyBLASTP
479186479572387membrane protein-like proteinQuickGO ontologyBLASTP
479729480175447cytochrome c556-like proteinQuickGO ontologyBLASTP
480169480570402hypothetical proteinBLASTP
4806544823421689NAD-dependent DNA ligase LigBQuickGO ontologyBLASTP
4824834836731191S-adenosylmethionine synthetaseQuickGO ontologyBLASTP
4836704846741005ArsR family transcriptional regulatorQuickGO ontologyBLASTP
484747485631885LysR family transcriptional regulatorQuickGO ontologyBLASTP
4857414868951155C4-dicarboxylate transportermalic acid transport proteinQuickGO ontologyBLASTP
4870084890082001transketolaseQuickGO ontologyBLASTP