Pre_GI: BLASTP Hits

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Query: NC_009439:442890:483670 Pseudomonas mendocina ymp, complete genome

Start: 483670, End: 484674, Length: 1005

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007912:556000:5743495743495753561008Saccharophagus degradans 2-40, complete genometranscriptional regulator, ArsR family1e-84313
NC_013223:2609697:261544826154482616377930Desulfohalobium retbaense DSM 5692, complete genometranscriptional regulator, ArsR family8e-31134
NC_010162:7899980:791627079162707916917648Sorangium cellulosum 'So ce 56', complete genomeSAM-dependent methyltransferase5e-1995.5
NC_021182:4088000:409260340926034093229627Clostridium pasteurianum BC1, complete genomemethylase involved in ubiquinone/menaquinone biosynthesis2e-1377
NC_010162:10764788:107674951076749510768448954Sorangium cellulosum 'So ce 56', complete genomeArsR family transcriptional regulator2e-1377
NC_011026:2624775:263940226394022640016615Chloroherpeton thalassium ATCC 35110, complete genomeMethyltransferase type 116e-1065.5
NC_010320:1268355:131352813135281313902375Thermoanaerobacter sp. X514 chromosome, complete genomeregulatory protein ArsR2e-0963.5
NC_014538:1598106:160048016004801600854375Thermoanaerobacter sp. X513 chromosome, complete genomeArsR family transcriptional regulator2e-0963.5
NC_015573:2040500:205804620580462058735690Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometype 11 methyltransferase2e-0963.5
NC_016627:4323370:432693843269384327312375Clostridium clariflavum DSM 19732 chromosome, complete genomeputative transcriptional regulator3e-0962.8
NC_010003:449192:466448466448466822375Petrotoga mobilis SJ95, complete genometranscriptional regulator, ArsR family1e-0860.8
NC_014410:800500:837621837621837995375Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transcriptional regulator, ArsR family1e-0860.8
NC_009486:155651:1661051661051690802976Thermotoga petrophila RKU-1 chromosome, complete genomeglycosyl transferase family protein2e-0860.1
NC_007907:5185510:525847652584765258850375Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0860.1
NC_016633:3069518:313530331353033135677375Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative transcriptional regulator4e-0859.3
NC_007907:960104:100435610043561004730375Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-0858.9
NC_011529:766292:776366776366776980615Thermococcus onnurineus NA1, complete genomeubiquinone/menaquinone biosynthesis methyltransferase; (ubiE)5e-0858.9
NC_020210:2133996:213888821388882139457570Geobacillus sp. GHH01, complete genomeputative methyltransferase6e-0858.5
NC_014328:180482:183193183193183558366Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative transcriptional regulator9e-0858.2
NC_006510:2110430:211371321137132114282570Geobacillus kaustophilus HTA426, complete genomeSAM-dependent methyltransferase9e-0858.2
NC_017093:1411532:143225814322581433055798Actinoplanes missouriensis 431, complete genomeputative ubiquinone/menaquinone methyltransferase1e-0757.8
NC_021182:2059143:205914320591432059550408Clostridium pasteurianum BC1, complete genomeputative transcriptional regulator2e-0757.4
NC_008262:2498000:251577325157732516132360Clostridium perfringens SM101, complete genometranscription repressor smtb-like protein PAB06252e-0757.4
NC_010376:49185:701447014470512369Finegoldia magna ATCC 29328, complete genomeArsR family transcriptional regulator1e-0757.4
NC_014374:318528:323924323924324487564Acidilobus saccharovorans 345-15 chromosome, complete genomehypothetical protein2e-0756.6
NC_009089:370555:373980373980374345366Clostridium difficile 630, complete genomeArsR-family transcriptional regulator4e-0755.8
NC_013316:371953:375379375379375744366Clostridium difficile R20291, complete genomeArsR-family transcriptional regulator4e-0755.8
NC_003413:694475:716903716903717427525Pyrococcus furiosus DSM 3638, complete genomeputative methyltransferase7e-0755.1
NC_016887:3286436:330251433025143303320807Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein7e-0755.1
NC_014377:1985714:198916819891681989536369Thermosediminibacter oceani DSM 16646 chromosome, complete genomeregulatory protein ArsR6e-0755.1
NC_015379:3175500:318995831899583190671714Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative Methyltransferase1e-0654.3
NC_007604:1442500:145991414599141460555642Synechococcus elongatus PCC 7942, complete genomemembrane-associated protein1e-0654.3
NC_007907:5185510:522420452242045224521318Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0653.9
NC_014355:3669470:3682546368254636837331188Candidatus Nitrospira defluvii, complete genomeputative methyltransferase, UbiE-family2e-0653.9
NC_014328:2467239:247198824719882472737750Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative methyltransferase2e-0653.9
NC_007333:1743890:179373217937321794109378Thermobifida fusca YX, complete genomeregulatory protein, ArsR1e-0653.9
NC_010003:449192:471582471582471902321Petrotoga mobilis SJ95, complete genometranscriptional regulator, ArsR family3e-0653.1
NC_008705:1557711:160485416048541605237384Mycobacterium sp. KMS, complete genomeregulatory protein, ArsR4e-0652.4
NC_015573:110108:128766128766129527762Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometype 11 methyltransferase4e-0652.4
NC_004547:3866439:389050438905043891274771Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative methyltransferase8e-0651.6
NC_013642:545464:5527305527305558643135Thermotoga naphthophila RKU-10, complete genomeglycosyl transferase family 29e-0651.6
NC_000853:771746:7790127790127821463135Thermotoga maritima MSB8, complete genomegalactosyltransferase-related protein9e-0651.6