Pre_GI: BLASTP Hits

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Query: NC_009439:442890:469752 Pseudomonas mendocina ymp, complete genome

Start: 469752, End: 470285, Length: 534

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008740:443274:500493500493501011519Marinobacter aquaeolei VT8, complete genomeRubredoxin-type Fe(Cys)4 protein2e-48191
NC_008740:683081:696986696986697504519Marinobacter aquaeolei VT8, complete genomeRubredoxin-type Fe(Cys)4 protein6e-48189
NC_008260:3053775:306457530645753065099525Alcanivorax borkumensis SK2, complete genomerubredoxin2e-47187
NC_009439:442890:470321470321470719399Pseudomonas mendocina ymp, complete genomerubredoxin-type Fe(Cys)4 protein2e-1789
NC_016745:1719800:1741208174120817425961389Oceanimonas sp. GK1 chromosome, complete genomerubredoxin-NAD(+) reductase2e-1271.6
NC_008826:539835:555735555735555926192Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein1e-1169.3
NC_008826:539835:555562555562555738177Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencerubredoxin3e-1168.2
NC_019970:510632:522193522193522357165Thermoanaerobacterium thermosaccharolyticum M0795, complete genomerubredoxin3e-1167.8
NC_003454:2080705:2090185209018520920951911Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeACYL-COA dehydrogenase, short-chain specific4e-1167.8
NC_012883:1695703:170222017022201702384165Thermococcus sibiricus MM 739, complete genomeRubredoxin5e-1167.4
NC_020134:2772500:279024527902452790466222Clostridium stercorarium subsp. stercorarium DSM 8532, completerubredoxin7e-1167
NC_010084:988908:100094410009441001246303Burkholderia multivorans ATCC 17616 chromosome 1, completerubredoxin-type Fe(Cys)4 protein1e-1066.2
NC_014377:210888:215027215027215185159Thermosediminibacter oceani DSM 16646 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein1e-1066.2
NC_014410:525645:535169535169535327159Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Rubredoxin-type Fe(Cys)4 protein1e-1065.9
NC_007644:626992:643906643906644064159Moorella thermoacetica ATCC 39073, complete genomeRubredoxin-type Fe(Cys)4 protein2e-1065.5
NC_015555:430054:439224439224439382159Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeRubredoxin-type Fe(Cys)4 protein2e-1065.5
NC_014752:1331447:134548513454851345655171Neisseria lactamica ST-640, complete genomerubredoxin2e-1065.1
NC_007510:2805121:281260028126002812782183Burkholderia sp. 383 chromosome 1, complete sequenceRubredoxin-type Fe(Cys)4 protein3e-1064.7
NC_010804:2518695:252364725236472523829183Burkholderia multivorans ATCC 17616 chromosome 1, completerubredoxin3e-1064.3
NC_014926:1108811:111011611101161110280165Thermovibrio ammonificans HB-1 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein4e-1063.9
NC_015379:2505233:253276225327622532968207Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,rubredoxin5e-1063.9
NC_014315:2659479:268175726817572681921165Nitrosococcus watsoni C-113 chromosome, complete genomerubredoxin-type Fe(Cys)4 protein6e-1063.5
NC_015680:841783:859983859983860144162Pyrococcus yayanosii CH1 chromosome, complete genomerubredoxin1e-0962.8
NC_018870:2316499:236735823673582368029672Thermacetogenium phaeum DSM 12270 chromosome, complete genomeputative rubredoxin2e-0962.4
NC_015474:1490668:149126414912641491425162Pyrococcus sp. NA2 chromosome, complete genomerubredoxin2e-0962
NC_008390:2643653:264866326486632648875213Burkholderia cepacia AMMD chromosome 1, complete sequenceRubredoxin-type Fe(Cys)4 protein2e-0962
NC_009076:1102500:112145611214561121659204Burkholderia pseudomallei 1106a chromosome I, complete sequencerubredoxin2e-0961.6
NC_009074:1092000:111115011111501111353204Burkholderia pseudomallei 668 chromosome I, complete sequencerubredoxin2e-0961.6
NC_016048:797762:838082838082838246165Oscillibacter valericigenes Sjm18-20, complete genomerubredoxin3e-0961.2
NC_009718:731670:738699738699738860162Fervidobacterium nodosum Rt17-B1, complete genomerubredoxin-type Fe(Cys)4 protein5e-0960.8
NC_010551:2537876:254290925429092543091183Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceRubredoxin-type Fe(Cys)4 protein4e-0960.8
NC_020209:4643901:466102346610234661190168Pseudomonas poae RE*1-1-14, complete genomerubredoxin4e-0960.8
NC_013926:829665:836988836988837146159Aciduliprofundum boonei T469 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein9e-0959.7
NC_010622:2385932:239105923910592391235177Burkholderia phymatum STM815 chromosome 1, complete sequenceRubredoxin-type Fe(Cys)4 protein1e-0858.9
NC_019942:112182:125060125060125218159Aciduliprofundum sp. MAR08-339, complete genomerubredoxin1e-0858.9
NC_009465:90000:112092112092112262171Candidatus Vesicomyosocius okutanii HA, complete genomerubredoxin2e-0858.9
NC_010681:1325632:134256213425621342753192Burkholderia phytofirmans PsJN chromosome 1, complete sequenceRubredoxin-type Fe(Cys)4 protein2e-0858.5
NC_008312:6072000:607330960733096073470162Trichodesmium erythraeum IMS101, complete genomeRubredoxin-type Fe(Cys)4 protein2e-0858.5
NC_014828:2038692:207582520758252075989165Ethanoligenens harbinense YUAN-3 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein3e-0857.8
NC_011653:1574415:159341715934171593575159Thermosipho africanus TCF52B, complete genomerubredoxin5e-0857.4
NC_015381:3457784:346514034651403465322183Burkholderia gladioli BSR3 chromosome 1, complete sequenceRubredoxin9e-0856.6
NC_009512:1025365:104051910405191040698180Pseudomonas putida F1, complete genomeRubredoxin-type Fe(Cys)4 protein1e-0755.8
NC_015172:3095781:309578130957813096515735Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeflavin reductase domain protein FMN-binding protein2e-0755.1
NC_009483:3644677:366646736664673666625159Geobacter uraniireducens Rf4 chromosome, complete genomerubredoxin-type Fe(Cys)4 protein9e-0753.1
NC_013173:2305394:232538223253822325546165Desulfomicrobium baculatum DSM 4028, complete genomeRubredoxin-type Fe(Cys)4 protein1e-0652.8
NC_008011:860000:876328876328876531204Lawsonia intracellularis PHE/MN1-00, complete genomeRubredoxin 2 (Rd-2)2e-0652
NC_015589:626321:642716642716642871156Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein2e-0651.6
NC_014972:2980974:299228429922842992457174Desulfobulbus propionicus DSM 2032 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein3e-0651.2
NC_017243:2778427:2782610278261027845291920Brachyspira intermedia PWS/A chromosome, complete genomeacyl-CoA dehydrogenase7e-0650.1
NC_012225:2523262:2531543253154325334621920Brachyspira hyodysenteriae WA1, complete genomeacyl-CoA dehydrogenase7e-0650.1
NC_008820:2422000:243280424328042432965162Prochlorococcus marinus str. MIT 9303, complete genomeRubredoxin8e-0650.1