Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:2772500 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
27725022772906405flagellar protein FliSQuickGO ontologyBLASTP
277294227749091968flagellar hook-associated protein 2QuickGO ontologyBLASTP
27749142775231318flagellar protein FlaGQuickGO ontologyBLASTP
277566227769061245flagellinQuickGO ontologyBLASTP
27770412777307267carbon storage regulatorQuickGO ontologyBLASTP
27773202777766447flagellar assembly factor FliWQuickGO ontologyBLASTP
27778212778732912flagellar hook-associated protein 3QuickGO ontologyBLASTP
277877527803791605flagellar hook-associated protein 1QuickGO ontologyBLASTP
278041127824142004flagellar hook-associated protein 1QuickGO ontologyBLASTP
27825272783030504flagella synthesis protein FlgNQuickGO ontologyBLASTP
27832112783498288flagellar biosynthesis anti-sigma factor FlgMQuickGO ontologyBLASTP
27836242784049426flagellar operon protein YvyFQuickGO ontologyBLASTP
27841162784880765phosphoribosyltransferaseQuickGO ontologyBLASTP
278487727870902214helicase RecDTraA familyQuickGO ontologyBLASTP
27871172787479363hypothetical protein
278761927886711053metal dependent phosphohydrolaseQuickGO ontologyBLASTP
278866827898551188S-adenosylmethionine synthase MetKQuickGO ontologyBLASTP
27902452790466222rubredoxinQuickGO ontologyBLASTP
27904982791070573sporulation protein YyaCQuickGO ontologyBLASTP
27911122791246135hypothetical protein
279140727925461140putative phosphataseQuickGO ontologyBLASTP