Pre_GI: BLASTP Hits

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Query: NC_020134:2772500:2777041 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 2777041, End: 2777307, Length: 267

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009012:2661795:266773026677302667957228Clostridium thermocellum ATCC 27405, complete genomecarbon storage regulator, CsrA2e-1684.3
NC_011653:466007:476799476799477020222Thermosipho africanus TCF52B, complete genomecarbon storage regulator2e-1477.8
NC_004193:2553630:256156125615612561785225Oceanobacillus iheyensis HTE831, complete genomecarbon storage regulator3e-1477
NC_014098:3030274:304985130498513050114264Bacillus tusciae DSM 2912 chromosome, complete genomecarbon storage regulator, CsrA3e-1477
NC_007759:1356439:137836113783611378600240Syntrophus aciditrophicus SB, complete genomecarbon storage regulator5e-1476.3
NC_014650:376070:378051378051378278228Geobacillus sp. Y4.1MC1 chromosome, complete genomecarbon storage regulator CsrA9e-1475.5
NC_014378:261064:262089262089262334246Acetohalobium arabaticum DSM 5501 chromosome, complete genomecarbon storage regulator, CsrA1e-1375.5
NC_009617:4946000:495035949503594950577219Clostridium beijerinckii NCIMB 8052 chromosome, complete genomecarbon storage regulator CsrA1e-1375.1
NC_014387:605711:619047619047619265219Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeglobal regulator family protein2e-1374.3
NC_013093:2599591:261551726155172615777261Actinosynnema mirum DSM 43827, complete genomecarbon storage regulator, CsrA3e-1373.9
NC_018664:239000:253889253889254218330Clostridium acidurici 9a chromosome, complete genomecarbon storage regulator4e-1373.2
NC_015660:391627:393625393625393864240Geobacillus thermoglucosidasius C56-YS93 chromosome, completecarbon storage regulator CsrA4e-1373.2
NC_009698:2727203:273886327388632739081219Clostridium botulinum A str. Hall chromosome, complete genomecarbon storage regulator7e-1372.8
NC_009697:2790277:280193728019372802155219Clostridium botulinum A str. ATCC 19397 chromosome, completecarbon storage regulator7e-1372.8
NC_009495:2876865:288852528885252888743219Clostridium botulinum A str. ATCC 3502 chromosome, complete genomecarbon storage regulator7e-1372.8
NC_012563:3090954:310261431026143102832219Clostridium botulinum A2 str. Kyoto, complete genomecarbon storage regulator7e-1372.8
NC_009699:2901497:291214829121482912366219Clostridium botulinum F str. Langeland chromosome, complete genomecarbon storage regulator8e-1372.4
NC_012658:2930244:294012129401212940339219Clostridium botulinum Ba4 str. 657 chromosome, complete genomecarbon storage regulator8e-1372.4
NC_017297:2905138:291228629122862912504219Clostridium botulinum F str. 230613 chromosome, complete genomecarbon storage regulator8e-1372.4
NC_014829:3877701:388161838816183881845228Bacillus cellulosilyticus DSM 2522 chromosome, complete genomecarbon storage regulator, CsrA1e-1272
NC_010516:2900057:290760929076092907827219Clostridium botulinum B1 str. Okra, complete genomecarbon storage regulator1e-1272
NC_010520:2937981:294796629479662948184219Clostridium botulinum A3 str. Loch Maree, complete genomecarbon storage regulator1e-1272
NC_020291:4944835:498819749881974988415219Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomecarbon storage regulator CsrA1e-1271.6
NC_013406:6568273:658420465842046584428225Paenibacillus sp. Y412MC10 chromosome, complete genomecarbon storage regulator, CsrA2e-1271.2
NC_019978:2260395:227347822734782273708231Halobacteroides halobius DSM 5150, complete genomecarbon storage regulator CsrA2e-1271.2
NC_010723:801215:807025807025807240216Clostridium botulinum E3 str. Alaska E43, complete genomecarbon storage regulator3e-1270.9
NC_016641:945284:952253952253952486234Paenibacillus terrae HPL-003 chromosome, complete genomecarbon storage regulator2e-1270.9
NC_010674:828191:829847829847830062216Clostridium botulinum B str. Eklund 17B, complete genomecarbon storage regulator2e-1270.9
NC_010718:2337209:237080523708052371041237Natranaerobius thermophilus JW/NM-WN-LF, complete genomecarbon storage regulator, CsrA4e-1270.1
NC_012914:6583000:660219766021976602436240Paenibacillus sp. JDR-2, complete genomecarbon storage regulator, CsrA4e-1270.1
NC_020541:2769419:279027827902782790481204Rhodanobacter sp. 2APBS1, complete genomecarbon storage regulator CsrA5e-1269.7
NC_017295:2286911:230065423006542300875222Clostridium acetobutylicum EA 2018 chromosome, complete genomeCarbon storage regulator, csrA5e-1269.7
NC_010337:748467:769908769908770171264Heliobacterium modesticaldum Ice1, complete genomecarbon storage regulator6e-1269.3
NC_009454:2201987:220504022050402205321282Pelotomaculum thermopropionicum SI, complete genomecarbon storage regulator6e-1269.3
NC_017195:3426000:343496534349653435189225Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completecarbon storage regulator7e-1269.3
NC_014915:3259440:328064932806493280888240Geobacillus sp. Y412MC52 chromosome, complete genomecarbon storage regulator, CsrA8e-1269.3
NC_006510:3133965:315488231548823155130249Geobacillus kaustophilus HTA426, complete genomecarbon storage regulator1e-1168.9
NC_013791:1082951:109933410993341099564231Bacillus pseudofirmus OF4 chromosome, complete genomecarbon storage regulator1e-1168.6
NC_012793:3035978:304111530411153041363249Geobacillus sp. WCH70, complete genomecarbon storage regulator, CsrA1e-1168.2
NC_009633:760872:777447777447777674228Alkaliphilus metalliredigens QYMF chromosome, complete genomecarbon storage regulator2e-1167.8
NC_019897:128610:178515178515178757243Thermobacillus composti KWC4 chromosome, complete genomecarbon storage regulator CsrA2e-1167.4
NC_013522:698114:704672704672704938267Thermanaerovibrio acidaminovorans DSM 6589, complete genomecarbon storage regulator, CsrA5e-1166.6
NC_014328:1046958:106469010646901064905216Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative carbon storage regulator7e-1165.9
NC_019896:577594:588729588729588953225Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeCarbon storage regulator - like protein8e-1165.9
NC_015460:1687684:170857717085771708765189Gallibacterium anatis UMN179 chromosome, complete genomecarbon storage regulator1e-1065.1
NC_015565:1920329:192570519257051925938234Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completecarbon storage regulator CsrA2e-1064.7
NC_015425:1207314:121786412178641218085222Clostridium botulinum BKT015925 chromosome, complete genomecarbon storage regulator CsrA2e-1064.7
NC_015589:1240197:126215912621591262404246Desulfotomaculum ruminis DSM 2154 chromosome, complete genomecarbon storage regulator2e-1064.7
NC_018080:2288700:231320523132052313384180Pseudomonas aeruginosa DK2 chromosome, complete genomecarbon storage regulator4e-1063.5
NC_009656:2422083:242839924283992428770372Pseudomonas aeruginosa PA7 chromosome, complete genomeregulatory protein4e-1063.2
NC_007517:480303:485123485123485359237Geobacter metallireducens GS-15, complete genomecarbon storage regulator, CsrA5e-1063.2
NC_014109:27500:470944709447273180Candidatus Riesia pediculicola USDA chromosome, complete genomecarbon storage regulator5e-1063.2
NC_011567:2556915:255691525569152557163249Anoxybacillus flavithermus WK1, complete genomeRNA-binding global regulator CsrA7e-1062.8
NC_009253:2615777:263490226349022635144243Desulfotomaculum reducens MI-1 chromosome, complete genomecarbon storage regulator CsrA9e-1062.4
NC_013592:3618248:362182636218263622011186Dickeya dadantii Ech586, complete genomecarbon storage regulator, CsrA8e-1062.4
NC_012880:1127997:114273211427321142917186Dickeya dadantii Ech703, complete genomecarbon storage regulator, CsrA8e-1062.4
NC_011899:1807365:182759218275921827837246Halothermothrix orenii H 168, complete genomecarbon storage regulator, CsrA1e-0961.6
NC_008011:924392:933304933304933993690Lawsonia intracellularis PHE/MN1-00, complete genomehypothetical protein2e-0960.8
NC_021182:2921000:293225229322522932467216Clostridium pasteurianum BC1, complete genomecarbon storage regulator CsrA3e-0960.5
NC_014652:1091610:109431910943191094561243Caldicellulosiruptor hydrothermalis 108 chromosome, completecarbon storage regulator, csra9e-0958.9
NC_004129:5204500:521390452139045214092189Pseudomonas fluorescens Pf-5, complete genomecarbon storage regulator9e-0958.9
NC_005773:4028500:404662040466204046808189Pseudomonas syringae pv. phaseolicola 1448A, complete genomecarbon storage regulator9e-0958.9
NC_013223:724394:725335725335725595261Desulfohalobium retbaense DSM 5692, complete genomecarbon storage regulator, CsrA1e-0858.5
NC_016012:561687:571102571102571326225Candidatus Arthromitus sp. SFB-rat-Yit, complete genomecarbon storage regulator, CsrA1e-0755.5
NC_015913:624859:631489631489631713225Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomecarbon storage regulator1e-0755.1
NC_007503:861668:863314863314863532219Carboxydothermus hydrogenoformans Z-2901, complete genomecarbon storage regulator1e-0755.1
NC_004578:4432983:445413944541394454333195Pseudomonas syringae pv. tomato str. DC3000, complete genomecarbon storage regulator, putative2e-0754.7
NC_010501:4379920:438935243893524389765414Pseudomonas putida W619, complete genomecarbon storage regulator, CsrA4e-0753.1
NC_013124:1544821:155043615504361550789354Acidimicrobium ferrooxidans DSM 10331, complete genomecarbon storage regulator, CsrA5e-0753.1
NC_021150:3505234:351785035178503517999150Azotobacter vinelandii CA6, complete genomecarbon storage regulator, CsrA2e-0651.6
NC_012560:3505235:351785135178513518000150Azotobacter vinelandii DJ, complete genomecarbon storage regulator, CsrA2e-0651.6
NC_013861:3341955:335664433566443356904261Legionella longbeachae NSW150, complete genomeglobal regulator2e-0651.2