Pre_GI: BLASTP Hits

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Query: NC_020134:2772500:2791407 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 2791407, End: 2792546, Length: 1140

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014392:2513529:2513529251352925146261098Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeputative PAS/PAC sensor protein9e-48191
NC_009633:1058000:1074544107454410762681725Alkaliphilus metalliredigens QYMF chromosome, complete genomestage II sporulation E family protein7e-35148
NC_012796:3374911:3433254343325434344891236Desulfovibrio magneticus RS-1, complete genomehypothetical protein2e-29130
NC_014614:478578:4929924929924946951704Clostridium sticklandii, complete genomeputative Serine phosphatase precursor7e-29128
NC_014844:3469848:3485824348582434885982775Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePAS sensor protein2e-23110
NC_012796:4693500:4710180471018047113341155Desulfovibrio magneticus RS-1, complete genomeresponse regulator receiver protein2e-22107
NC_010337:2339056:2351249235124923524331185Heliobacterium modesticaldum Ice1, complete genomeresponse regulator receiver modulated serine phosphatase1e-22107
NC_013223:1763631:1767581176758117688101230Desulfohalobium retbaense DSM 5692, complete genomeputative PAS/PAC sensor protein3e-21103
NC_013790:85889:1007111007111025821872Methanobrevibacter ruminantium M1 chromosome, complete genomeserine phosphatase9e-1994.7
NC_010655:1808657:1810066181006618117031638Akkermansia muciniphila ATCC BAA-835, complete genomeputative PAS/PAC sensor protein3e-1893.2
NC_010475:2188827:2193624219362421956992076Synechococcus sp. PCC 7002, complete genometwo-component response regulator4e-1892.8
NC_020209:945000:9484489484489496291182Pseudomonas poae RE*1-1-14, complete genomeputative response regulator3e-1892.8
NC_016830:4639388:4656628465662846578091182Pseudomonas fluorescens F113 chromosome, complete genomeprotein RsbU7e-1891.7
NC_004129:2201780:2203108220310822042921185Pseudomonas fluorescens Pf-5, complete genomeresponse regulator1e-1790.9
NC_018704:347948:3504003504003514101011Amphibacillus xylanus NBRC 15112, complete genomephosphoserine phosphatase RsbU2e-1790.5
NC_006138:1571878:1571878157187815739772100Desulfotalea psychrophila LSv54, complete genomesimilar to ICFG protein3e-1790.1
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit5e-1789
NC_010814:2217153:2238961223896122422093249Geobacter lovleyi SZ, complete genomeputative phytochrome sensor protein7e-1788.6
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein3e-1686.7
NC_008027:3953951:3973312397331239744961185Pseudomonas entomophila L48, complete genomeresponse regulator5e-1685.9
NC_007512:944941:9756209756209775511932Pelodictyon luteolum DSM 273, complete genomeserine phosphatase5e-1685.9
NC_010501:1868888:1868888186888818701261239Pseudomonas putida W619, complete genomeresponse regulator receiver modulated serine phosphatase7e-1685.5
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein9e-1684.7
NC_004605:1092476:1108107110810711093271221Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative two-component response regulator2e-1583.6
NC_016622:170000:1881271881271893501224Azospirillum lipoferum 4B, complete genomeputative two-component response regulator3e-1583.2
NC_007512:1162949:1181383118138311833561974Pelodictyon luteolum DSM 273, complete genomeserine phosphatase5e-1582.4
NC_008536:5421036:5441250544125054424371188Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver modulated serine phosphatase6e-1582
NC_014219:567033:5670335670335680461014Bacillus selenitireducens MLS10 chromosome, complete genomeprotein serine/threonine phosphatase7e-1582
NC_016751:1700164:1703150170315017045621413Marinitoga piezophila KA3 chromosome, complete genomeserine phosphatase RsbU, regulator of sigma subunit6e-1479
NC_015565:2827444:2832013283201328332181206Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeprotein serine/threonine phosphatase6e-1479
NC_006582:883922:8843548843548853701017Bacillus clausii KSM-K16, complete genomeindirect positive regulator of sigma-B activity8e-1478.6
NC_010410:3166279:317913831791383180106969Acinetobacter baumannii AYE, complete genomeputative two-component response regulator1e-1377.8
NC_010611:679862:684391684391685359969Acinetobacter baumannii ACICU, complete genomeSerine phosphatase RsbU, regulator of sigma subunit1e-1377.8
NC_014483:562594:5796755796755821522478Paenibacillus polymyxa E681 chromosome, complete genomeGAF domain containing protein2e-1377.4
NC_007604:2555000:2555003255500325563911389Synechococcus elongatus PCC 7942, complete genomeserine phosphatase2e-1377
NC_006576:1743500:1760393176039317617811389Synechococcus elongatus PCC 6301, complete genomehypothetical protein2e-1377
NC_008011:1394777:1409027140902714110302004Lawsonia intracellularis PHE/MN1-00, complete genomeputative regulator4e-1376.3
NC_009925:1109770:1125246112524611263731128Acaryochloris marina MBIC11017, complete genometwo-component response regulator, putative7e-1375.1
NC_017059:2771085:2818972281897228212362265Rhodospirillum photometricum DSM 122, complete genomeSerine phosphatase RsbU regulator sigma subunit1e-1274.7
NC_008148:1711679:1713663171366317147961134Rubrobacter xylanophilus DSM 9941, complete genomeputative PAS/PAC sensor protein2e-1273.9
NC_016047:637778:6377786377786387851008Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completephosphoserine phosphatase RsbU3e-1273.2
NC_008009:2430509:2437727243772724387521026Acidobacteria bacterium Ellin345, complete genomeserine phosphatase3e-1273.2
NC_013939:1688400:1701781170178117049903210Deferribacter desulfuricans SSM1, complete genomeserine phosphatase5e-1272.4
NC_016622:527688:5342885342885354751188Azospirillum lipoferum 4B, complete genomeputative two-component response regulator5e-1272.4
NC_019896:3491000:3518845351884535198521008Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSigma factor sig regulation protein RsbU2e-1170.5
NC_014976:2735423:2735423273542327364301008Bacillus subtilis BSn5 chromosome, complete genomeserine phosphatase3e-1170.1
NC_011983:508287:5207735207735230972325Agrobacterium radiobacter K84 chromosome 2, complete genometranscriptional regulator protein4e-1169.3
NC_007205:60069:6232362323645602238Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein5e-1169.3
NC_007205:60069:7711577115784611347Candidatus Pelagibacter ubique HTCC1062, complete genomeSigma factor sigB regulation protein5e-1169.3
NC_013595:8338619:8338619833861983417743156Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein7e-1168.6
NC_017290:1096599:1117259111725911191661908Chlamydophila psittaci 08DC60 chromosome, complete genomeputative regulatory protein9e-1168.2
NC_019757:3869047:3886897388689738885701674Cylindrospermum stagnale PCC 7417, complete genomeserine phosphatase RsbU, regulator of sigma subunit2e-1067
NC_016751:1227495:1237036123703612381901155Marinitoga piezophila KA3 chromosome, complete genomeserine phosphatase RsbU, regulator of sigma subunit2e-1067
NC_016114:4333390:4349517434951743507971281Streptomyces flavogriseus ATCC 33331 chromosome, complete genomePAS/PAC sensor protein2e-1067
NC_012559:768939:7871377871377896412505Laribacter hongkongensis HLHK9, complete genomePutative PAS/PAC sensor protein3e-1066.6
NC_021177:7870464:7889172788917278902871116Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase4e-1065.9
NC_018750:5828000:5841875584187558445202646Streptomyces venezuelae ATCC 10712, complete genomeregulatory protein5e-1065.9
NC_010162:1222000:1243753124375312455251773Sorangium cellulosum 'So ce 56', complete genomehypothetical protein8e-1065.1
NC_010162:2406976:241723024172302418192963Sorangium cellulosum 'So ce 56', complete genomephosphoserine phosphatase8e-1065.1
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase1e-0964.7
NC_013510:1849751:1868469186846918705502082Thermomonospora curvata DSM 43183, complete genomeputative PAS/PAC sensor protein1e-0964.3
NC_018750:3661243:3676167367616736773661200Streptomyces venezuelae ATCC 10712, complete genomeSerine phosphatase RsbU, regulator of sigma subunit1e-0964.3
NC_008262:1950205:195678719567871957656870Clostridium perfringens SM101, complete genomeresponse regulatory protein (sensory transduction system)2e-0963.9
NC_013943:2857751:2872253287225328738151563Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeprotein serine/threonine phosphatase2e-0963.9
NC_004193:375416:6539466539466549591014Oceanobacillus iheyensis HTE831, complete genomeindirect positive regulator of sigma-B activity2e-0963.5
NC_014165:2081914:210025221002522101181930Thermobispora bispora DSM 43833 chromosome, complete genomeprotein serine/threonine phosphatase4e-0962.8
NC_012108:904260:9267529267529284521701Desulfobacterium autotrophicum HRM2, complete genomeRsbP5e-0962.8
NC_003155:921494:9359539359539387272775Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase6e-0962.4
NC_016582:1639375:1662621166262116654342814Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative regulatory protein phosphatase8e-0962
NC_013956:3641368:3666320366632036675491230Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein1e-0860.8
NC_016816:792460:7969587969587981871230Pantoea ananatis LMG 5342, complete genomeprotein serine/threonine phosphatase2e-0860.8
NC_018643:754104:7541047541047561042001Alpha proteobacterium HIMB5 chromosome, complete genomeCHASE2 domain-containing protein,Stage II sporulation protein E (SpoIIE)2e-0860.1
NC_015732:529201:5449445449445460681125Spirochaeta caldaria DSM 7334 chromosome, complete genomeresponse regulator receiver modulated protein serine/threonine phosphatase2e-0860.1
NC_003888:4523500:4526332452633245279901659Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-0860.1
NC_015953:5444572:5460375546037554629992625Streptomyces sp. SirexAA-E chromosome, complete genomeputative PAS/PAC sensor protein5e-0859.3
NC_006510:1501487:1517620151762015203252706Geobacillus kaustophilus HTA426, complete genomehypothetical protein5e-0859.3
NC_003366:2057656:206747820674782068377900Clostridium perfringens str. 13, complete genomehypothetical protein4e-0859.3
NC_009921:6483660:6510476651047665117141239Frankia sp. EAN1pec, complete genomeprotein serine/threonine phosphatase5e-0858.9
NC_009664:570768:5737565737565755071752Kineococcus radiotolerans SRS30216, complete genomeputative PAS/PAC sensor protein6e-0858.9
NC_010162:2406976:2413825241382524162122388Sorangium cellulosum 'So ce 56', complete genomephosphoserine phosphatase6e-0858.9
NC_015732:529201:5279475279475292211275Spirochaeta caldaria DSM 7334 chromosome, complete genomeprotein serine/threonine phosphatase7e-0858.5
NC_015321:4142843:4160692416069241640033312Fluviicola taffensis DSM 16823 chromosome, complete genomeprotein serine/threonine phosphatase1e-0758.2
NC_007519:791679:7947047947047962121509Desulfovibrio alaskensis G20 chromosome, complete genomeserine phosphatase1e-0757.8
NC_012121:1578190:1595479159547915964801002Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative sigmaB regulation protein RsbU2e-0757
NC_011661:203929:2047552047552061521398Dictyoglomus turgidum DSM 6724, complete genomediguanylate cyclase and metal dependent phosphohydrolase3e-0756.6
NC_010572:4024810:4037560403756040392991740Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein4e-0756.2
NC_009051:1118486:1141453114145311437142262Methanoculleus marisnigri JR1, complete genomeputative PAS/PAC sensor protein3e-0756.2
NC_015172:1161000:1169223116922311712502028Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase2e-0653.9
NC_013510:5394432:5415681541568154194273747Thermomonospora curvata DSM 43183, complete genomemulti-sensor hybrid histidine kinase2e-0653.9
NC_010718:1229355:1233359123335912347921434Natranaerobius thermophilus JW/NM-WN-LF, complete genomePAS modulated sigma54 specific transcriptional regulator, Fis family7e-0652
NC_007205:60069:6006960069622042136Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein8e-0651.6